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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SYS1
SYS1 golgi trafficking protein
Chromosome 20 · 20q13.12
NCBI Gene: 90196Ensembl: ENSG00000204070.11HGNC: HGNC:16162UniProt: Q8N2H4
15PubMed Papers
11Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingGolgi to endosome transportprotein localization to Golgi apparatusGolgi to plasma membrane protein transportneurodegenerative diseaseposterior cortical atrophycancerneoplasm
✦AI Summary

SYS1 (SYS1 golgi trafficking protein) is a multi-spanning transmembrane protein that plays a crucial role in Golgi apparatus function and intracellular protein trafficking. SYS1 forms a complex with ARFRP1 and serves as a receptor for this ARF-family GTPase at the trans-Golgi network (TGN) 1. This SYS1-ARFRP1 complex recruits ARL5, which in turn activates downstream effectors including the GARP tethering complex for retrograde transport and ARMH3 for phosphatidylinositol 4-phosphate synthesis 1. Loss of SYS1 function has widespread effects on glycan biosynthesis, deforms the Golgi apparatus, and disrupts the localization of TGN proteins 2. SYS1 is also required for proper cell surface presentation of ADAM10, affecting cellular susceptibility to bacterial toxins like Staphylococcus aureus α-hemolysin 3. Additionally, SYS1 deficiency reduces expression of glycosphingolipids including Gb3 and sphingomyelin while increasing glucosylceramide and lactosylceramide levels 2. Clinically, SYS1 has been implicated in IgA nephropathy pathogenesis through epigenetic mechanisms in B cells 4, highlighting its potential relevance in kidney disease.

Sources cited
1
SYS1 forms complex with ARFRP1 at trans-Golgi network and recruits ARL5 to activate ARMH3 for PI4P synthesis
PMID: 39580461
2
Loss of SYS1 affects glycan biosynthesis, deforms Golgi apparatus, and disrupts TGN protein localization
PMID: 34066520
3
SYS1 regulates ADAM10 surface presentation affecting susceptibility to bacterial alpha hemolysin toxin
PMID: 27066838
4
SYS1 methylation changes are associated with IgA nephropathy in B cells
PMID: 33319642
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ11
neurodegenerative diseaseOpen Targets
0.37Weak
posterior cortical atrophyOpen Targets
0.01Suggestive
cancerOpen Targets
0.00Suggestive
lipodystrophyOpen Targets
0.00Suggestive
neoplasmOpen Targets
0.00Suggestive
AtrophyOpen Targets
0.00Suggestive
IGA glomerulonephritisOpen Targets
0.00Suggestive
myeloid sarcomaOpen Targets
0.00Suggestive
acute myeloid leukemiaOpen Targets
0.00Suggestive
cholangiocarcinomaOpen Targets
0.00Suggestive
melanomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ARL3Protein interaction87%ARFRP1Protein interaction77%COG3Protein interaction74%RIC1Protein interaction73%PHAF1Shared pathway33%DOP1AShared pathway33%
Tissue Expression6 tissues
Liver
100%
Bone Marrow
99%
Lung
97%
Ovary
95%
Brain
83%
Heart
72%
Gene Interaction Network
Click a node to explore
SYS1ARL3ARFRP1COG3RIC1PHAF1DOP1A
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q8N2H4
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.97LoF Tolerant
pLIⓘ
0.04Tolerant
Observed/Expected LoF0.54 [0.32–0.97]
RankingsWhere SYS1 stands among ~20K protein-coding genes
  • #15,703of 20,598
    Most Researched15
  • #9,287of 17,882
    Most Constrained (LOEUF)0.97
Genes detectedSYS1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
ARMH3 is an ARL5 effector that promotes PI4KB-catalyzed PI4P synthesis at the trans-Golgi network.
PMID: 39580461
Nat Commun · 2024
1.00
2
Genome-wide CRISPR screen reveals novel host factors required for Staphylococcus aureus α-hemolysin-mediated toxicity.
PMID: 27066838
Sci Rep · 2016
0.90
3
Identification of SYS1 as a Host Factor Required for Shiga Toxin-Mediated Cytotoxicity in Vero Cells.
PMID: 34066520
Int J Mol Sci · 2021
0.80
4
Evaluation of a Pooling Chemoproteomics Strategy with an FDA-Approved Drug Library.
PMID: 35969671
Biochemistry · 2023
0.70
5
Expression of apoptotic and proliferation factors in gastric mucosa of patients with systemic sclerosis correlates with form of the disease.
PMID: 31804582
Sci Rep · 2019
0.60