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GeneE
8 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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THAP12
THAP domain containing 12
Chromosome 11 · 11q13.5
NCBI Gene: 5612Ensembl: ENSG00000137492.10HGNC: HGNC:9440UniProt: A0A140VJQ7
41PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingsignal transductionnegative regulation of cell population proliferationprotein dimerization activityovarian neoplasmobesitytype 1 diabetes nephropathyspontaneous abortion
✦AI Summary

THAP12 (THAP domain containing 12) is an essential regulator of interferon-induced protein kinase R (PKR) signaling and early brain development. As an upstream regulator of PKR, THAP12 blocks the PKR-inhibitory function of DNAJC3, thereby restoring PKR kinase activity and suppressing cell growth [UniProt]. The protein mediates these effects through protein-protein interactions, notably with LDOC1 in regulating histone H2B monoubiquitination and chr11 accessibility in non-small cell lung cancer 1. Mechanistically, THAP12 dysfunction leads to loss-of-function phenotypes characterized by dysregulation of cell cycle and apoptotic pathways. Biallelic loss-of-function variants in THAP12 cause autosomal recessive developmental and epileptic encephalopathy (DEE), with patients presenting infantile spasms progressing to Lennox-Gastaut syndrome 2. Animal models confirm THAP12's dosage-sensitive essentiality: homozygous and compound heterozygous mice exhibit embryonic lethality, while zebrafish models recapitulate microcephaly, brain hypoplasia, abnormal neuronal activity, and increased seizure sensitivity 2. Wild-type human THAP12 rescues these phenotypes, whereas patient-derived variants do not 2. Clinically, THAP12 dysfunction represents a previously unrecognized cause of undiagnosed DEE cases, providing diagnostic and therapeutic targets for severe childhood neurological disorders.

Sources cited
1
THAP12 interacts with LDOC1 and participates in regulating histone H2Bub1 recruitment and chromatin remodeling in non-small cell lung cancer
PMID: 41484780
2
Biallelic loss-of-function THAP12 variants cause autosomal recessive developmental and epileptic encephalopathy with infantile spasms and Lennox-Gastaut syndrome progression; THAP12 is essential for early brain development and neuronal survival
PMID: 41822681
⚠Limited data available — This gene has 2 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
ovarian neoplasmOpen Targets
0.11Weak
obesityOpen Targets
0.11Weak
type 1 diabetes nephropathyOpen Targets
0.10Suggestive
spontaneous abortionOpen Targets
0.07Suggestive
Crohn's diseaseOpen Targets
0.07Suggestive
MODYOpen Targets
0.06Suggestive
maturity-onset diabetes of the young type 3Open Targets
0.05Suggestive
diabetes mellitusOpen Targets
0.04Suggestive
maturity-onset diabetes of the young type 10Open Targets
0.04Suggestive
type 2 diabetes mellitusOpen Targets
0.04Suggestive
hyperproinsulinemiaOpen Targets
0.04Suggestive
Glycogen storage disease due to hepatic glycogen synthase deficiencyOpen Targets
0.04Suggestive
glycogen storage disorder due to hepatic glycogen synthase deficiencyOpen Targets
0.04Suggestive
prostate cancerOpen Targets
0.04Suggestive
Crigler-Najjar syndrome type 2Open Targets
0.03Suggestive
Alzheimer diseaseOpen Targets
0.03Suggestive
diabetes mellitus, permanent neonatal 4Open Targets
0.03Suggestive
placenta praeviaOpen Targets
0.03Suggestive
cardiomyopathyOpen Targets
0.02Suggestive
rectosigmoid junction neoplasmOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
POU1F1Shared pathway100%ZBTB7CShared pathway100%TESShared pathway100%CGREF1Shared pathway100%TP53I11Shared pathway100%RARRES1Shared pathway100%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
54%
Ovary
50%
Heart
49%
Lung
48%
Liver
37%
Gene Interaction Network
Click a node to explore
THAP12POU1F1ZBTB7CTESCGREF1TP53I11RARRES1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt O43422
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.51Moderately Constrained
pLIⓘ
0.96Intolerant
Observed/Expected LoF0.34 [0.23–0.51]
RankingsWhere THAP12 stands among ~20K protein-coding genes
  • #10,100of 20,598
    Most Researched41
  • #3,149of 17,882
    Most Constrained (LOEUF)0.51 · top quartile
Genes detectedTHAP12
Sources retrieved8 papers
Response time—
📄 Sources
8▼
1
LDOC1 connects histone H2B monoubiquitination to tumor cell plasticity in non-small cell lung cancer.
PMID: 41484780
Cell Commun Signal · 2026
1.00
2
Ultra-rare biallelic
PMID: 41822681
medRxiv · 2026
0.88
3
Identification of KRAS mutation in a patient with linear nevus sebaceous syndrome: a case report.
PMID: 33308209
BMC Med Genomics · 2020
0.75
4
Identification and characterization of p100HB, a new mutant form of p100/NF-kappa B2.
PMID: 12927781
Biochem Biophys Res Commun · 2003
0.63
5
Death-associated protein 4 binds MST1 and augments MST1-induced apoptosis.
PMID: 12384512
J Biol Chem · 2002
0.50