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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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TK2
thymidine kinase 2
Chromosome 16 · 16q21
NCBI Gene: 7084Ensembl: ENSG00000166548.17HGNC: HGNC:11831UniProt: A4IF54
59PubMed Papers
22Diseases
0Drugs
94Pathogenic Variants
FUNCTIONAL ROLE
Kinase
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
deoxycytidine kinase activitymitochondrionprotein bindingthymidine kinase activitymitochondrial DNA depletion syndrome, myopathic formprogressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 3mitochondrial DNA depletion syndromemitochondrial disease
✦AI Summary

TK2 (thymidine kinase 2) is a mitochondrial matrix protein that phosphorylates pyrimidine deoxynucleosides—thymidine, deoxycytidine, and deoxyuridine—to their corresponding monophosphates 1. This activity is essential for the salvage pathway that supplies pyrimidine nucleotides for mitochondrial DNA (mtDNA) synthesis and maintenance, particularly in non-replicating cells where cytosolic dNTP synthesis is downregulated 2. TK2 functions alongside DGUOK to sustain mtDNA replication in these metabolic contexts 2. Autosomal recessive TK2 mutations cause mitochondrial DNA depletion syndrome 2 and progressive external ophthalmoplegia with mtDNA deletions, characterized by severe mtDNA depletion or multiple mtDNA deletions 3. Three distinct clinical phenotypes emerge: infantile-onset (42.4% of cases) with severe mtDNA depletion and median survival of 1 year, childhood-onset (40.2%) with moderate progression and median survival of ≥13 years, and late-onset (17.4%) with slow progression and median survival of 23 years 3. All presentations manifest primarily as myopathy with variable neurological involvement 3. Recent compassionate use studies demonstrate clinical efficacy of deoxynucleoside monophosphate and deoxynucleoside therapies in TK2-deficient patients, with improvements in motor function and stabilization of disease progression 4. These emerging interventions represent a significant advancement, as no efficacious therapy previously existed for this severe disorder 5.

Sources cited
1
TK2 catalyzes phosphorylation of pyrimidine deoxynucleosides and plays a key role in mitochondrial salvage pathway for mtDNA synthesis
PMID: 18459168
2
TK2 functions in maintaining balanced mitochondrial nucleotide pool and is crucial for mtDNA maintenance
PMID: 28215579
3
Autosomal recessive TK2 mutations cause three distinct clinical phenotypes with different ages of onset, severity of mtDNA depletion, and survival outcomes
PMID: 29602790
4
Deoxynucleoside monophosphate and deoxynucleoside therapies show clinical efficacy and safety in TK2-deficient patients with improvements in motor function
PMID: 31125140
5
TK2 mutations cause myopathic mitochondrial DNA depletion syndrome with infantile presentation and hypotonia/muscle weakness; no efficacious therapy previously available
PMID: 23385875
Disease Associationsⓘ22
mitochondrial DNA depletion syndrome, myopathic formOpen Targets
0.83Strong
progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 3Open Targets
0.74Strong
mitochondrial DNA depletion syndromeOpen Targets
0.68Moderate
mitochondrial diseaseOpen Targets
0.65Moderate
neurodegenerative diseaseOpen Targets
0.42Moderate
genetic disorderOpen Targets
0.41Moderate
autosomal recessive progressive external ophthalmoplegiaOpen Targets
0.37Weak
myopathyOpen Targets
0.34Weak
Abnormality of the musculatureOpen Targets
0.27Weak
lysosomal storage diseaseOpen Targets
0.19Weak
diabetic eye diseaseOpen Targets
0.16Weak
Mitochondrial myopathyOpen Targets
0.12Weak
inborn mitochondrial myopathyOpen Targets
0.11Weak
neoplasmOpen Targets
0.04Suggestive
spinocerebellar ataxia type 31Open Targets
0.04Suggestive
Young adult-onset ParkinsonismOpen Targets
0.03Suggestive
hyperinsulinemic hypoglycemia, familial, 4Open Targets
0.03Suggestive
Proximal spinal muscular atrophy type 4Open Targets
0.03Suggestive
spinal muscular atrophy, type IVOpen Targets
0.03Suggestive
autosomal dominant mitochondrial myopathy with exercise intoleranceOpen Targets
0.03Suggestive
Mitochondrial DNA depletion syndrome 2UniProt
Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 3UniProt
Pathogenic Variants94
NM_004614.5(TK2):c.416C>T (p.Ala139Val)Pathogenic
not provided|Mitochondrial DNA depletion syndrome|Mitochondrial DNA depletion syndrome, myopathic form;Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 3|TK2-related disorder|Mitochondrial disease
★★☆☆2026→ Residue 139
NM_004614.5(TK2):c.133C>T (p.Gln45Ter)Pathogenic
not provided|Mitochondrial DNA depletion syndrome, myopathic form;Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 3|Mitochondrial disease
★★☆☆2026→ Residue 45
NM_004614.5(TK2):c.404C>T (p.Ser135Leu)Pathogenic
not provided|Mitochondrial disease
★★☆☆2026→ Residue 135
NM_004614.5(TK2):c.156+2T>CPathogenic
not provided|Mitochondrial DNA depletion syndrome|Mitochondrial disease
★★☆☆2026
NM_004614.5(TK2):c.623A>G (p.Tyr208Cys)Pathogenic
not provided|Mitochondrial DNA depletion syndrome, myopathic form;Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 3|Mitochondrial disease
★★☆☆2026→ Residue 208
NM_004614.5(TK2):c.415G>A (p.Ala139Thr)Pathogenic
not provided|Mitochondrial disease|Mitochondrial DNA depletion syndrome, myopathic form;Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 3|Mitochondrial DNA depletion syndrome
★★☆☆2025→ Residue 139
NM_004614.5(TK2):c.323C>T (p.Thr108Met)Pathogenic
Mitochondrial DNA depletion syndrome, myopathic form|not provided|Mitochondrial DNA depletion syndrome|Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 3|TK2-related disorder|Mitochondrial disease
★★☆☆2025→ Residue 108
NM_004614.5(TK2):c.760C>T (p.Arg254Ter)Likely pathogenic
not provided|Mitochondrial disease
★★☆☆2025→ Residue 254
NM_004614.5(TK2):c.173A>G (p.Asn58Ser)Pathogenic
not provided|Mitochondrial DNA depletion syndrome, myopathic form;Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 3|Mitochondrial DNA depletion syndrome|Mitochondrial DNA depletion syndrome 2, myopathic form|Mitochondrial disease
★★☆☆2025→ Residue 58
NM_004614.5(TK2):c.372_373delinsCT (p.Gln125Ter)Pathogenic
not provided|Mitochondrial DNA depletion syndrome, myopathic form|Mitochondrial disease|Mitochondrial DNA depletion syndrome, myopathic form;Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 3
★★☆☆2025→ Residue 125
NM_004614.5(TK2):c.144_145del (p.Lys50fs)Pathogenic
Mitochondrial DNA depletion syndrome, myopathic form|not provided|Mitochondrial disease|Mitochondrial DNA depletion syndrome, myopathic form;Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 3|Mitochondrial DNA depletion syndrome
★★☆☆2025→ Residue 50
NM_004614.5(TK2):c.328C>T (p.Gln110Ter)Pathogenic
Mitochondrial DNA depletion syndrome, myopathic form|Mitochondrial disease
★★☆☆2025→ Residue 110
NM_004614.5(TK2):c.103C>T (p.Gln35Ter)Pathogenic
not provided|Mitochondrial disease
★★☆☆2025→ Residue 35
NM_004614.5(TK2):c.129_132del (p.Lys43fs)Pathogenic
Mitochondrial DNA depletion syndrome, myopathic form|not provided|Mitochondrial disease
★★☆☆2025→ Residue 43
NM_004614.5(TK2):c.536_538+8delPathogenic
not provided|Mitochondrial disease|Mitochondrial DNA depletion syndrome, myopathic form
★★☆☆2025
NM_004614.5(TK2):c.441del (p.Tyr148fs)Pathogenic
not provided|Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 3;Mitochondrial DNA depletion syndrome, myopathic form|Mitochondrial DNA depletion syndrome, myopathic form|Mitochondrial disease
★★☆☆2025→ Residue 148
NM_004614.5(TK2):c.562A>G (p.Thr188Ala)Likely pathogenic
Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 3|not provided|Mitochondrial disease
★★☆☆2025→ Residue 188
NM_004614.5(TK2):c.635T>A (p.Ile212Asn)Pathogenic
Mitochondrial DNA depletion syndrome, myopathic form|not provided|Mitochondrial disease
★★☆☆2025→ Residue 212
NM_004614.5(TK2):c.150dup (p.Ser51fs)Pathogenic
not provided|Mitochondrial disease
★★☆☆2025→ Residue 51
NM_004614.5(TK2):c.349A>G (p.Met117Val)Pathogenic
not provided|Mitochondrial disease
★★☆☆2025→ Residue 117
View on ClinVar ↗
Related Genes
NDUFV1Protein interaction100%NDUFS4Protein interaction100%NDUFS8Protein interaction100%NDUFS2Protein interaction100%NT5C2Protein interaction97%NT5MProtein interaction96%
Tissue Expression6 tissues
Liver
100%
Ovary
73%
Heart
54%
Lung
47%
Brain
46%
Bone Marrow
26%
Gene Interaction Network
Click a node to explore
TK2NDUFV1NDUFS4NDUFS8NDUFS2NT5C2NT5M
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt O00142
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.10LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.83 [0.64–1.10]
RankingsWhere TK2 stands among ~20K protein-coding genes
  • #7,825of 20,598
    Most Researched59
  • #821of 5,498
    Most Pathogenic Variants94 · top quartile
  • #11,245of 17,882
    Most Constrained (LOEUF)1.10
Genes detectedTK2
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Mitochondrial DNA maintenance defects.
PMID: 28215579
Biochim Biophys Acta Mol Basis Dis · 2017
1.00
2
Retrospective natural history of thymidine kinase 2 deficiency.
PMID: 29602790
J Med Genet · 2018
0.90
3
A 20-year Clinical and Genetic Neuromuscular Cohort Analysis in Lebanon: An International Effort.
PMID: 34602496
J Neuromuscul Dis · 2022
0.80
4
Mitochondrial DNA depletion syndromes: review and updates of genetic basis, manifestations, and therapeutic options.
PMID: 23385875
Neurotherapeutics · 2013
0.70
5
Mitochondrial myopathies.
PMID: 17053512
Curr Opin Rheumatol · 2006
0.60