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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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TNP1
transition protein 1
Chromosome 2 · 2q35
NCBI Gene: 7141Ensembl: ENSG00000118245.2HGNC: HGNC:11951UniProt: P09430
31PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
DNA bindingprotein bindingsingle strand break repairnucleosome disassemblybreast carcinomabreast cancerAbnormality of the skeletal systemestrogen-receptor positive breast cancer
✦AI Summary

TNP1 (transition protein 1) is a highly basic nuclear protein of 54 amino acids 1 that plays a critical role in replacing histones with protamines during mammalian spermatogenesis. TNP1 is expressed in haploid spermatogenic cells during spermiogenesis, where it promotes the recruitment and processing of protamines responsible for histone eviction and sperm chr2 condensation 2. The TNP1 gene, located on chromosome 2-q36 1, contains a single intron and is regulated by TATA boxes and cAMP-response elements (CREs) with conserved 5' and 3' untranslated regions across mammalian species 3. TNP1 expression is coordinated with the histone-to-protamine transition through phase-separated condensates involving regulatory proteins like CCER1 2. Clinically, TNP1 genetic variations are associated with male infertility: a 15-nucleotide deletion in the TNP1 promoter region reduces expression and causes infertility 4, while the TNP1 GCG haplotype significantly increases azoospermia risk 5. TNP1 serves as a marker for spermatid differentiation in testicular organoids 6. Additionally, TNP1 functions as an autoantigen in lupus nephritis, with anti-TNP1 antibodies detected in 63.6% of lupus nephritis patients 7.

Sources cited
1
TNP1 is a 54 amino acid basic protein located on chromosome 2q35-q36 with conserved gene structure across species
PMID: 2249851
2
TNP1 functions in histone-to-protamine transition and chromatin condensation, coordinated by CCER1 phase-separated condensates
PMID: 38081819
3
TNP1 gene contains single intron and conserved regulatory sequences including TATA boxes and CREs across mammalian species
PMID: 18562159
4
TNP1 promoter deletion reduces expression and causes male infertility
PMID: 16291974
5
TNP1 GCG haplotype is significantly associated with azoospermia risk
PMID: 20522125
6
TNP1 serves as a molecular marker for spermatid identification in testicular organoids
PMID: 39404405
7
TNP1 functions as an autoantigen in lupus nephritis with anti-TNP1 antibodies in 63.6% of LN patients
PMID: 26098692
Disease Associationsⓘ20
breast carcinomaOpen Targets
0.33Weak
breast cancerOpen Targets
0.32Weak
Abnormality of the skeletal systemOpen Targets
0.31Weak
estrogen-receptor positive breast cancerOpen Targets
0.30Weak
breast neoplasmOpen Targets
0.30Weak
carpal tunnel syndromeOpen Targets
0.30Weak
luminal A breast carcinomaOpen Targets
0.29Weak
adolescent idiopathic scoliosisOpen Targets
0.27Weak
mitral valve prolapseOpen Targets
0.27Weak
COVID-19Open Targets
0.27Weak
cervical carcinomaOpen Targets
0.26Weak
biliary tract cancerOpen Targets
0.26Weak
endometrial cancerOpen Targets
0.26Weak
hepatocellular carcinomaOpen Targets
0.26Weak
colorectal cancerOpen Targets
0.25Weak
bronchus cancerOpen Targets
0.25Weak
lung cancerOpen Targets
0.25Weak
ovarian cancerOpen Targets
0.25Weak
esophageal cancerOpen Targets
0.25Weak
prostate carcinomaOpen Targets
0.25Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
PRM2Protein interaction97%PRM1Protein interaction96%KDM3AProtein interaction86%NUPR1Protein interaction84%VIL1Protein interaction77%SPEM1Protein interaction75%
Tissue Expression6 tissues
Liver
100%
Ovary
71%
Brain
12%
Bone Marrow
12%
Lung
12%
Heart
0%
Gene Interaction Network
Click a node to explore
TNP1PRM2PRM1KDM3ANUPR1VIL1SPEM1
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt P09430
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.77LoF Tolerant
pLIⓘ
0.75Intermediate
Observed/Expected LoF0.16 [0.06–0.77]
RankingsWhere TNP1 stands among ~20K protein-coding genes
  • #11,817of 20,598
    Most Researched31
  • #6,275of 17,882
    Most Constrained (LOEUF)0.77
Genes detectedTNP1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Phase-separated CCER1 coordinates the histone-to-protamine transition and male fertility.
PMID: 38081819
Nat Commun · 2023
1.00
2
Establishment and Characterization of Testis Organoids with Proliferation and Differentiation of Spermatogonial Stem Cells into Spermatocytes and Spermatids.
PMID: 39404405
Cells · 2024
0.90
3
Single-nucleotide polymorphisms and mutation analyses of the TNP1 and TNP2 genes of fertile and infertile human male populations.
PMID: 16291974
J Androl · 2005
0.80
4
Comparative gene mapping: cytogenetic localization of PROC, EN1, ALPI, TNP1, and IL1B in cattle and sheep reveals a conserved rearrangement relative to the human genome.
PMID: 9925918
Cytogenet Cell Genet · 1998
0.70
5
Comparative genomics reveals gene-specific and shared regulatory sequences in the spermatid-expressed mammalian Odf1, Prm1, Prm2, Tnp1, and Tnp2 genes.
PMID: 18562159
Genomics · 2008
0.60