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4 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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TRAPPC13
trafficking protein particle complex subunit 13
Chromosome 5 · 5q12.3
NCBI Gene: 80006Ensembl: ENSG00000113597.19HGNC: HGNC:25828UniProt: A5PLN9
27PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingTRAPPIII protein complexvesicle coatingcytoplasmneurodegenerative diseaseventral herniadiverticular diseaseAbnormality of the skeletal system
✦AI Summary

TRAPPC13 is a subunit of the mammalian TRAPPIII complex, a conserved regulator of membrane trafficking 1. As part of TRAPPIII, TRAPPC13 functions as a guanine nucleotide exchange factor (GEF) with selective specificity for Rab1 and Rab43 GTPases, distinct from TRAPPII which targets Rab1 and Rab11 1. TRAPPC13 is enriched at the base of primary cilia 2 and plays critical roles in endoplasmic reticulum-to-Golgi and intra-Golgi vesicular transport through its GEF activity 3. Under Golgi stress conditions induced by brefeldin A, TRAPPC13 depletion reduces Rab1a/1b activity, impairs autophagy, and paradoxically preserves secretory pathway viability in an ARF1 and GBF1-dependent manner 3. This survival response involves reduced caspase activation and ER stress marker induction, suggesting TRAPPC13's role in autophagic flux during cellular stress 3. The TRAPPIII complex containing TRAPPC13 exhibits enhanced GEF activity when associated with lipid membranes, with complex-specific subunits altering the active site architecture compared to TRAPPII 1. These findings indicate TRAPPC13 is essential for maintaining proper vesicular trafficking and stress-responsive autophagy.

Sources cited
1
TRAPPC13 is enriched at the base of primary cilia in cultured retinal pigmented epithelial cells
PMID: 27514913
2
TRAPPC13 is part of mammalian TRAPPIII complex, modulates autophagy, affects response to Golgi stress agents, and regulates Rab1a/1b activity
PMID: 28536105
3
TRAPPC13 is a TRAPPIII-specific subunit with GEF activity toward Rab1 and Rab43, distinct from TRAPPII; TRAPPIII has enhanced GEF activity on membranes
PMID: 34229011
4
TRAPPC13 is a metazoan TRAPPIII subunit absent in S. cerevisiae, recruited to complex by Tca17/TRAPPC2L, with primary essential role in activating Rab GTPases
PMID: 31869332
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.51Moderate
ventral herniaOpen Targets
0.37Weak
diverticular diseaseOpen Targets
0.11Weak
Abnormality of the skeletal systemOpen Targets
0.08Suggestive
stenosing tenosynovitisOpen Targets
0.05Suggestive
Incisional herniaOpen Targets
0.05Suggestive
food allergyOpen Targets
0.02Suggestive
glomerulonephritisOpen Targets
0.02Suggestive
ovarian neoplasmOpen Targets
0.02Suggestive
Inguinal herniaOpen Targets
0.02Suggestive
IGA glomerulonephritisOpen Targets
0.00Suggestive
type 1 diabetes mellitusOpen Targets
0.00Suggestive
prostate adenocarcinomaOpen Targets
0.00Suggestive
meningococcal infectionOpen Targets
0.00Suggestive
Alzheimer diseaseOpen Targets
0.00Suggestive
infectionOpen Targets
0.00Suggestive
EndometritisOpen Targets
0.00Suggestive
Parkinson diseaseOpen Targets
0.00Suggestive
atrial fibrillationOpen Targets
0.00Suggestive
chronic lung allograft dysfunctionOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
TBC1D14Protein interaction100%TRAPPC12Protein interaction93%TRAPPC11Protein interaction93%TRAPPC6AProtein interaction93%RAB1AProtein interaction92%TRAPPC9Protein interaction90%
Tissue Expression6 tissues
Heart
100%
Bone Marrow
96%
Brain
92%
Liver
54%
Lung
44%
Ovary
42%
Gene Interaction Network
Click a node to explore
TRAPPC13TBC1D14TRAPPC12TRAPPC11TRAPPC6ARAB1ATRAPPC9
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt A5PLN9
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.11LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.79 [0.58–1.11]
RankingsWhere TRAPPC13 stands among ~20K protein-coding genes
  • #12,699of 20,598
    Most Researched27
  • #11,345of 17,882
    Most Constrained (LOEUF)1.11
Genes detectedTRAPPC13
Sources retrieved4 papers
Response time—
📄 Sources
4
1
Targeting of ASH Domain-Containing Proteins to the Centrosome.
PMID: 27514913
Methods Mol Biol · 2016
1.00
2
TRAPPC13 modulates autophagy and the response to Golgi stress.
PMID: 28536105
J Cell Sci · 2017
0.75
3
Biochemical Insight into Novel Rab-GEF Activity of the Mammalian TRAPPIII Complex.
PMID: 34229011
J Mol Biol · 2021
0.50
4
Characterization of Aspergillus nidulans TRAPPs uncovers unprecedented similarities between fungi and metazoans and reveals the modular assembly of TRAPPII.
PMID: 31869332
PLoS Genet · 2019
0.25