HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
TRDMT1
tRNA aspartic acid methyltransferase 1
Chromosome 10 · 10p13
NCBI Gene: 1787Ensembl: ENSG00000107614.22HGNC: HGNC:2977UniProt: B4DQZ2
53PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
tRNA methylationcytoplasmtRNA methyltransferase activitytRNA (cytidine-N5)-methyltransferase activityneurodegenerative diseasehyperlipidemiametabolic diseasevitamin deficiency disorder
✦AI Summary

TRDMT1 (tRNA aspartic acid methyltransferase 1) is a highly conserved RNA methyltransferase that specifically catalyzes 5-methylcytosine (m5C) modification at cytosine 38 in the anticodon loop of tRNA(Asp), with enhanced activity on queuosine-modified tRNA(Asp) 12. Beyond tRNA, TRDMT1 methylates mRNA, promoting tRNA stability and precise protein synthesis 3. Mechanistically, TRDMT1 maintains translational fidelity; its loss compromises this function, causing misfolded protein accumulation and proteotoxic stress 4. The enzyme recognizes substrates through target recognition domain (TRD) and extension domain (TRED), with substrate preference modulated by target cytosine accessibility 5. Clinically, TRDMT1 dysfunction has significant implications for cancer therapy and inflammation. In cancer cells, TRDMT1 knockout sensitizes multiple cancer types to chemotherapy and radiotherapy through impaired unfolded protein response and increased apoptosis susceptibility 43. TRDMT1 depletion inhibits HEK293 cell proliferation and migration via altered mRNA m5C methylation 6. Conversely, in inflammation, TRDMT1 provides protective effects against LPS-induced sepsis through TLR4-NF-κB/MAPK-TNF-α pathway regulation 7. TRDMT1 knockout also restricts STING-mediated immune responses in senescent cancer cells 8. These findings position TRDMT1 as a promising therapeutic target for treating cancer, parasitic, and viral diseases 9.

Sources cited
1
TRDMT1 specifically methylates cytosine 38 in the anticodon loop of tRNA(Asp)
PMID: 16424344
2
TRDMT1 has higher activity on tRNA(Asp) modified with queuosine at position 34
PMID: 30093495
3
TRDMT1 knockout compromises translational fidelity, causes misfolded protein accumulation, and sensitizes cancer cells to ER stress-induced apoptosis
PMID: 36273376
4
TRDMT1 methylates both tRNA and mRNA, promotes tRNA stability and proper protein synthesis, and orchestrates DNA damage response
PMID: 37625528
5
TRDMT1 depletion inhibits HEK293 cell proliferation and migration through altered mRNA m5C modifications
PMID: 31570165
6
TRDMT1 exhibits protective effects against LPS-induced inflammation through TLR4-NF-κB/MAPK-TNF-α pathway regulation
PMID: 35474613
7
TRDMT1 substrate preference is determined by target recognition domain (TRD) and extension domain (TRED), with recognition of characteristic tRNA sequence CUXXCAC in the anticodon loop
PMID: 37966982
8
TRDMT1 knockout restricts STING-mediated immune and cell death response in senescent osteosarcoma cells
PMID: 40801921
9
TRDMT1 is involved in gene expression, precise protein synthesis, immune response, and disease pathogenesis, making it a promising therapeutic target for parasitic, viral and oncologic diseases
PMID: 38782147
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.37Weak
hyperlipidemiaOpen Targets
0.34Weak
metabolic diseaseOpen Targets
0.33Weak
vitamin deficiency disorderOpen Targets
0.33Weak
HypercholesterolemiaOpen Targets
0.32Weak
vitamin B12 deficiencyOpen Targets
0.32Weak
megaloblastic anemiaOpen Targets
0.32Weak
cervical carcinomaOpen Targets
0.31Weak
vitamin B deficiencyOpen Targets
0.30Weak
alcohol drinkingOpen Targets
0.29Weak
deficiency anemiaOpen Targets
0.28Weak
ParalysisOpen Targets
0.26Weak
respiratory failureOpen Targets
0.10Weak
breast cancerOpen Targets
0.08Suggestive
hypertensionOpen Targets
0.07Suggestive
neoplasmOpen Targets
0.07Suggestive
neuroblastomaOpen Targets
0.06Suggestive
cancerOpen Targets
0.05Suggestive
gastric cancerOpen Targets
0.05Suggestive
plasma protein metabolism diseaseOpen Targets
0.05Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
DNMT3LProtein interaction100%DNMT3BProtein interaction96%NSUN3Protein interaction93%NSUN4Protein interaction92%NOP2Protein interaction92%DNMT3AProtein interaction90%
Tissue Expression6 tissues
Ovary
100%
Bone Marrow
71%
Heart
57%
Lung
47%
Brain
44%
Liver
18%
Gene Interaction Network
Click a node to explore
TRDMT1DNMT3LDNMT3BNSUN3NSUN4NOP2DNMT3A
PROTEIN STRUCTURE
Preparing viewer…
PDB1G55 · 1.80 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.44LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.06 [0.79–1.44]
RankingsWhere TRDMT1 stands among ~20K protein-coding genes
  • #8,510of 20,598
    Most Researched53
  • #14,764of 17,882
    Most Constrained (LOEUF)1.44
Genes detectedTRDMT1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
DNMT2/TRDMT1 gene knockout compromises doxorubicin-induced unfolded protein response and sensitizes cancer cells to ER stress-induced apoptosis.
PMID: 36273376
Apoptosis · 2023
1.00
2
TRDMT1-mediated RNA C-5 methylation as a novel target in anticancer therapy.
PMID: 37625528
Biochim Biophys Acta Rev Cancer · 2023
0.90
3
Biological function molecular pathways and druggability of DNMT2/TRDMT1.
PMID: 38782147
Pharmacol Res · 2024
0.80
4
TRDMT1 methyltransferase gene knockout attenuates STING-based cell death signaling during self-extracellular RNA-mediated response in drug-induced senescent osteosarcoma cells.
PMID: 40801921
Cell Mol Life Sci · 2025
0.70
5
RNA cytosine methylation and methyltransferases mediate chromatin organization and 5-azacytidine response and resistance in leukaemia.
PMID: 29563491
Nat Commun · 2018
0.60