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GeneE
50 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
TSC2
TSC complex subunit 2
Chromosome 16 Β· 16p13.3
NCBI Gene: 7249Ensembl: ENSG00000103197.20HGNC: HGNC:12363UniProt: A0A2R8Y6C9
539PubMed Papers
23Diseases
0Drugs
1,439Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedHub GeneTumor Suppressor
RESEARCH IMPACT
Highly StudiedVariant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
cytoplasmperinuclear region of cytoplasmTSC1-TSC2 complexGTPase activator activitytuberous sclerosistuberous sclerosis 2lymphangioleiomyomatosisisolated focal cortical dysplasia type II
✦AI Summary

TSC2 (tuberous sclerosis complex subunit 2) is the catalytic component of the TSC-TBC complex, a critical negative regulator of mTORC1 signaling 1. As a GTPase-activating protein (GAP), TSC2 inactivates RHEB, a direct mTORC1 activator, thereby suppressing downstream phosphorylation of translation regulators RPS6KB1/2 and 4E-BP1 12. In nutrient-replete conditions, the TSC complex is inactivated, allowing mTORC1 activation and anabolic processes; conversely, nutrient starvation activates TSC2 to inhibit mTORC1 13. TSC2 is regulated by Akt-dependent phosphorylation, linking growth factor signaling to mTOR control 1. TSC2 mutations cause tuberous sclerosis complex (TSC), an autosomal-dominant disorder characterized by widespread hamartomas 4. TSC2 mutations are more common than TSC1 mutations and are associated with more severe phenotypes, including intellectual disability, autism spectrum disorders, and drug-resistant epilepsy 56. Constitutive mTORC1 activation from TSC2 loss drives pathological cell growth in multiple tissues, including renal neoplasms and pulmonary vascular disease 78. mTOR inhibitors (rapamycin, everolimus) represent precision medicine approaches for TSC management 4.

Sources cited
1
TSC2 inhibits mTOR signaling, is phosphorylated by Akt, and suppresses translation via p70 S6K1 and 4E-BP1
PMID: 12172553
2
TSC2 functions as a GAP for RHEB to negatively regulate mTORC1
PMID: 12842888
3
TSC complex is inactivated in response to nutrients, relieving mTORC1 inhibition
PMID: 24529379
4
Comprehensive mutation analysis showing TSC2 mutations are more common than TSC1 and associated with more severe intellectual disability in sporadic cases
PMID: 10205261
5
TSC is autosomal-dominant disorder from TSC1/TSC2 mutations causing constitutive mTOR activation; mTOR inhibitors are therapeutic
PMID: 29478616
6
TSC2 mutations associate with more severe phenotypes including autism, intellectual disability, and drug-resistant epilepsy
PMID: 39722056
7
TSC2 loss leads to mTORC1 activation and altered transcriptional programs in renal tumors
PMID: 35072947
8
TSC2 integrates extracellular matrix and mechanical signals with mTOR-mediated cell proliferation in vascular disease
PMID: 36473049
Disease Associationsβ“˜23
tuberous sclerosisOpen Targets
0.85Strong
tuberous sclerosis 2Open Targets
0.81Strong
lymphangioleiomyomatosisOpen Targets
0.81Strong
isolated focal cortical dysplasia type IIOpen Targets
0.74Strong
Lung LymphangioleiomyomatosisOpen Targets
0.61Moderate
hepatocellular carcinomaOpen Targets
0.59Moderate
hereditary neoplastic syndromeOpen Targets
0.57Moderate
Inherited cancer-predisposing syndromeOpen Targets
0.57Moderate
attenuated familial adenomatous polyposisOpen Targets
0.56Moderate
familial adenomatous polyposis 3Open Targets
0.56Moderate
tuberous sclerosis 1Open Targets
0.50Moderate
autism spectrum disorderOpen Targets
0.44Moderate
Cortical tubersOpen Targets
0.44Moderate
non-small cell lung carcinomaOpen Targets
0.39Weak
ovarian cancerOpen Targets
0.38Weak
PEComaOpen Targets
0.38Weak
kidney angiomyolipomaOpen Targets
0.38Weak
AngiofibromaOpen Targets
0.38Weak
subependymal giant cell astrocytomaOpen Targets
0.38Weak
skin basal cell carcinomaOpen Targets
0.37Weak
Focal cortical dysplasia 2UniProt
LymphangioleiomyomatosisUniProt
Tuberous sclerosis 2UniProt
Pathogenic Variants1,439
NM_000548.5(TSC2):c.5160+2_5160+3delPathogenic
Tuberous sclerosis syndrome|not provided|Tuberous sclerosis 2
β˜…β˜…β˜†β˜†2026
NM_000548.5(TSC2):c.138+2T>CPathogenic
Tuberous sclerosis syndrome|not provided|Tuberous sclerosis 2
β˜…β˜…β˜†β˜†2026
NM_000548.5(TSC2):c.3095G>C (p.Arg1032Pro)Pathogenic
Tuberous sclerosis syndrome|Tuberous sclerosis 2|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 1032
NM_000548.5(TSC2):c.1491del (p.Glu498fs)Pathogenic
Tuberous sclerosis syndrome|Tuberous sclerosis 2
β˜…β˜…β˜†β˜†2026β†’ Residue 498
NM_000548.5(TSC2):c.3259dup (p.Glu1087fs)Pathogenic
Tuberous sclerosis syndrome|Tuberous sclerosis 2|Tuberous sclerosis 1|Hereditary cancer-predisposing syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 1087
NM_000548.5(TSC2):c.4490C>T (p.Pro1497Leu)Pathogenic
Tuberous sclerosis 2
β˜…β˜…β˜†β˜†2026β†’ Residue 1497
NM_000548.5(TSC2):c.3284+1G>APathogenic
Tuberous sclerosis syndrome|not provided|Tuberous sclerosis 2
β˜…β˜…β˜†β˜†2026
NM_000548.5(TSC2):c.4473del (p.Val1492fs)Pathogenic
Tuberous sclerosis 2|not provided|Lymphangiomyomatosis
β˜…β˜…β˜†β˜†2026β†’ Residue 1492
NM_000548.5(TSC2):c.3412C>T (p.Arg1138Ter)Pathogenic
Tuberous sclerosis syndrome|not provided|Tuberous sclerosis 2|Hereditary cancer-predisposing syndrome|Lymphangiomyomatosis;Tuberous sclerosis 2;Isolated focal cortical dysplasia type II
β˜…β˜…β˜†β˜†2026β†’ Residue 1138
NM_000548.5(TSC2):c.1283_1285del (p.Ser428del)Pathogenic
Tuberous sclerosis syndrome|not provided|Tuberous sclerosis 2|TSC2-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 428
NM_000548.5(TSC2):c.5138G>A (p.Arg1713His)Pathogenic
Tuberous sclerosis syndrome|Hereditary cancer-predisposing syndrome|not provided|Tuberous sclerosis 2|Lymphangiomyomatosis;Tuberous sclerosis 2;Isolated focal cortical dysplasia type II
β˜…β˜…β˜†β˜†2026β†’ Residue 1713
NM_000548.5(TSC2):c.826_827del (p.Met276fs)Pathogenic
Tuberous sclerosis syndrome|Tuberous sclerosis 2|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 276
NM_000548.5(TSC2):c.3598C>T (p.Arg1200Trp)Pathogenic
Tuberous sclerosis syndrome|not provided|Tuberous sclerosis 2|Hereditary cancer-predisposing syndrome|Lymphangiomyomatosis;Tuberous sclerosis 2;Isolated focal cortical dysplasia type II|TSC2-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 1200
NM_000548.5(TSC2):c.4620C>G (p.Tyr1540Ter)Pathogenic
Tuberous sclerosis syndrome|Tuberous sclerosis 2|TSC2-related disorder|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 1540
NM_000548.5(TSC2):c.4255C>T (p.Gln1419Ter)Pathogenic
Tuberous sclerosis syndrome|not provided|Hereditary cancer-predisposing syndrome|Tuberous sclerosis 2
β˜…β˜…β˜†β˜†2026β†’ Residue 1419
NM_000548.5(TSC2):c.4174C>T (p.Gln1392Ter)Pathogenic
Tuberous sclerosis syndrome|Tuberous sclerosis 2|not provided|See cases
β˜…β˜…β˜†β˜†2025β†’ Residue 1392
NM_000548.5(TSC2):c.4672G>A (p.Glu1558Lys)Pathogenic
Tuberous sclerosis syndrome|Tuberous sclerosis 2|not provided|Hereditary cancer-predisposing syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 1558
NM_000548.5(TSC2):c.4318C>T (p.Gln1440Ter)Pathogenic
Tuberous sclerosis syndrome|Tuberous sclerosis 2|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 1440
NM_000548.5(TSC2):c.3259del (p.Glu1087fs)Pathogenic
Tuberous sclerosis syndrome|Tuberous sclerosis 2
β˜…β˜…β˜†β˜†2025β†’ Residue 1087
NM_000548.5(TSC2):c.2647C>T (p.Gln883Ter)Pathogenic
Tuberous sclerosis syndrome|Tuberous sclerosis 2|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 883
View on ClinVar β†—
Related Genes
DDIT4Protein interaction99%USP6Protein interaction98%UBE3AProtein interaction98%PRKAA1Protein interaction98%RPTORProtein interaction97%PRKAB1Protein interaction96%
Tissue Expression6 tissues
Ovary
100%
Liver
66%
Lung
59%
Bone Marrow
44%
Heart
41%
Brain
40%
Gene Interaction Network
Click a node to explore
TSC2DDIT4USP6UBE3APRKAA1RPTORPRKAB1
PROTEIN STRUCTURE
Preparing viewer…
PDB9CE3 Β· 2.90 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.20Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.15 [0.11–0.20]
RankingsWhere TSC2 stands among ~20K protein-coding genes
  • #464of 20,598
    Most Researched539 Β· top 5%
  • #21of 5,498
    Most Pathogenic Variants1,439 Β· top 1%
  • #465of 17,882
    Most Constrained (LOEUF)0.20 Β· top 5%
Genes detectedTSC2
Sources retrieved50 papers
Response timeβ€”
πŸ“„ Sources
50β–Ό
1
Comprehensive mutation analysis of TSC1 and TSC2-and phenotypic correlations in 150 families with tuberous sclerosis.
PMID: 10205261
Am J Hum Genet Β· 1999
1.00
2
TSC2 is phosphorylated and inhibited by Akt and suppresses mTOR signalling.
PMID: 12172553
Nat Cell Biol Β· 2002
0.90
3
Microglial SIRT1 activation attenuates synapse loss in retinal inner plexiform layer via mTORC1 inhibition.
PMID: 37670386
J Neuroinflammation Β· 2023
0.88
4
PMID: 31855466
Genet Test Mol Biomarkers Β· 2020
0.86
5
Pulmonary lymphangioleiomyomatosis.
PMID: 21128782
Arch Pathol Lab Med Β· 2010
0.84