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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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UBE2A
ubiquitin conjugating enzyme E2 A
Chromosome X Β· Xq24
NCBI Gene: 7319Ensembl: ENSG00000077721.17HGNC: HGNC:12472UniProt: A0A0D9SG71
113PubMed Papers
21Diseases
0Drugs
23Pathogenic Variants
FUNCTIONAL ROLE
DNA Repair
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
ubiquitin-protein transferase activityprotein bindingubiquitin protein ligase bindingubiquitin conjugating enzyme activitysyndromic X-linked intellectual disability Nascimento typeX-linked intellectual disability, Nascimento typeX-linked non-syndromic intellectual disabilityneurodegenerative disease
✦AI Summary

UBE2A is an E2 ubiquitin-conjugating enzyme that transfers ubiquitin from E1 to E3 ligases, catalyzing both Lys-11 and Lys-48-linked polyubiquitination 1. In transcriptional regulation, UBE2A works with E3 enzyme BRE1 to monoubiquitinate histone H2B at Lys-120, creating H2BK120ub1β€”a critical epigenetic mark for transcriptional activation and RNA polymerase II elongation 2. UBE2A regulates mitophagy by conjugating ubiquitin onto mitochondrial proteins in partnership with Parkin, essential for clearing dysfunctional mitochondria and maintaining neuronal function 3. It also participates in N-end rule-dependent protein degradation through association with E3 ligase UBR4, with its specific recruitment mediated by a distinct hemiRING-UZI module within UBR4 4. Clinically, UBE2A mutations cause X-linked intellectual developmental disorder, Nascimento-type (MRXSN), characterized by moderate-to-severe intellectual disability (100% of cases), speech and language impairment (97%), and dysmorphic facial features (94%) 5. Gene mutations account for 65% of cases while large segment deletions comprise 35% 5. Additionally, UBE2A mutations have been identified as novel candidate driver genes in endometrial polyp development 6, suggesting roles beyond neurodevelopment. Early genetic diagnosis enables optimal prenatal and postnatal management to improve outcomes 5.

Sources cited
1
UBE2A catalyzes monoubiquitination of histone H2B at Lys-120 with E3 enzyme BRE1, creating epigenetic marks for transcriptional activation and RNA Pol II elongation
PMID: 16337599
2
UBE2A catalyzes Lys-11 and Lys-48-linked polyubiquitination in vitro
PMID: 20061386
3
UBE2A mutations impair Parkin-dependent mitophagy, causing neuronal dysfunction and intellectual disability through defective mitochondrial clearance
PMID: 23685073
4
UBE2A is specifically recruited by UBR4's hemiRING-UZI E3 module for N-end rule-dependent protein degradation
PMID: 38182926
5
UBE2A mutations cause X-linked intellectual developmental disorder, Nascimento-type with moderate-severe intellectual disability (100%), speech impairment (97%), and dysmorphic features (94%)
PMID: 40695520
6
UBE2A identified as a novel candidate driver gene with recurrent mutations in endometrial polyps
PMID: 41137179
7
Novel hemizygous UBE2A missense mutations expand the mutational spectrum in UBE2A deficiency syndrome patients
PMID: 32222108
Disease Associationsβ“˜21
syndromic X-linked intellectual disability Nascimento typeOpen Targets
0.79Strong
X-linked intellectual disability, Nascimento typeOpen Targets
0.74Strong
X-linked non-syndromic intellectual disabilityOpen Targets
0.51Moderate
neurodegenerative diseaseOpen Targets
0.49Moderate
genetic disorderOpen Targets
0.46Moderate
diffuse large B-cell lymphomaOpen Targets
0.34Weak
Intellectual disabilityOpen Targets
0.27Weak
Neurodevelopmental delayOpen Targets
0.27Weak
Female infertility due to fertilization defectOpen Targets
0.07Suggestive
esophageal squamous cell carcinomaOpen Targets
0.07Suggestive
attention deficit hyperactivity disorderOpen Targets
0.07Suggestive
female infertility due to oocyte meiotic arrestOpen Targets
0.07Suggestive
oocyte maturation defect 14Open Targets
0.06Suggestive
oocyte maturation defect 5Open Targets
0.06Suggestive
melanomaOpen Targets
0.06Suggestive
hereditary attention deficit-hyperactivity disorderOpen Targets
0.06Suggestive
Hydatidiform MoleOpen Targets
0.05Suggestive
oocyte maturation defect 13Open Targets
0.05Suggestive
oocyte/zygote/embryo maturation arrest 21Open Targets
0.05Suggestive
premature ovarian failure 19Open Targets
0.05Suggestive
Intellectual developmental disorder, X-linked, syndromic, Nascimento-typeUniProt
Pathogenic Variants23
NM_003336.4(UBE2A):c.299ATG[1] (p.Asp101del)Likely pathogenic
Syndromic X-linked intellectual disability Nascimento type|Intellectual disability
β˜…β˜…β˜†β˜†2020β†’ Residue 101
NM_003336.4(UBE2A):c.126-1G>APathogenic
not provided
β˜…β˜†β˜†β˜†2025
NM_003336.4(UBE2A):c.330+1G>CLikely pathogenic
Syndromic X-linked intellectual disability Nascimento type
β˜…β˜†β˜†β˜†2023
GRCh38/hg38 Xq24(chrX:119582581-119589158)x0Pathogenic
Syndromic X-linked intellectual disability Nascimento type
β˜…β˜†β˜†β˜†2023
NM_003336.4(UBE2A):c.126-2A>GPathogenic
Syndromic X-linked intellectual disability Nascimento type|Nonpapillary renal cell carcinoma
β˜…β˜†β˜†β˜†2023
NM_003336.4(UBE2A):c.439C>T (p.Gln147Ter)Likely pathogenic
Syndromic X-linked intellectual disability Nascimento type
β˜…β˜†β˜†β˜†2023β†’ Residue 147
NM_003336.4(UBE2A):c.330+1delLikely pathogenic
Syndromic X-linked intellectual disability Nascimento type
β˜…β˜†β˜†β˜†2023
NM_003336.4(UBE2A):c.328C>G (p.Gln110Glu)Pathogenic
not provided
β˜…β˜†β˜†β˜†2022β†’ Residue 110
NM_003336.4(UBE2A):c.421_422del (p.Val141fs)Likely pathogenic
Syndromic X-linked intellectual disability Nascimento type
β˜…β˜†β˜†β˜†2022β†’ Residue 141
NM_003336.4(UBE2A):c.242-3_244delLikely pathogenic
Syndromic X-linked intellectual disability Nascimento type
β˜…β˜†β˜†β˜†2020
NM_003336.4(UBE2A):c.31_42del (p.Asp12_Arg15del)Likely pathogenic
Syndromic X-linked intellectual disability Nascimento type
β˜…β˜†β˜†β˜†2019β†’ Residue 12
NM_003336.4(UBE2A):c.108G>A (p.Trp36Ter)Pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2017β†’ Residue 36
NM_003336.4(UBE2A):c.125+2T>CPathogenic
not provided|Nonpapillary renal cell carcinoma
β˜…β˜†β˜†β˜†2017
NM_003336.4(UBE2A):c.67G>A (p.Gly23Arg)Pathogenic
Syndromic X-linked intellectual disability Nascimento type|not provided
β˜…β˜†β˜†β˜†2016β†’ Residue 23
NM_003336.4(UBE2A):c.1A>G (p.Met1Val)Likely pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2015β†’ Residue 1
NM_003336.4(UBE2A):c.2T>G (p.Met1Arg)Likely pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2015β†’ Residue 1
NM_003336.4(UBE2A):c.28A>C (p.Met10Leu)Likely pathogenic
Neurodevelopmental delay
β˜…β˜†β˜†β˜†β†’ Residue 10
GRCh38/hg38 Xq24-25(chrX:119043046-123885987)x2Pathogenic
Intellectual disability
β˜†β˜†β˜†β˜†2024
GRCh38/hg38 Xq24(chrX:119539765-119707314)x0Pathogenic
Syndromic X-linked intellectual disability Nascimento type
β˜†β˜†β˜†β˜†2024
NM_003336.4(UBE2A):c.330+1G>ALikely pathogenic
Syndromic X-linked intellectual disability Nascimento type
β˜†β˜†β˜†β˜†2019
View on ClinVar β†—
Related Genes
UBE2NProtein interaction100%UBE3AProtein interaction100%UBE2V1Protein interaction100%UBE2D2Protein interaction99%UBR1Protein interaction99%H2BC21Protein interaction99%
Tissue Expression6 tissues
Heart
100%
Bone Marrow
99%
Brain
75%
Lung
63%
Ovary
42%
Liver
35%
Gene Interaction Network
Click a node to explore
UBE2AUBE2NUBE3AUBE2V1UBE2D2UBR1H2BC21
PROTEIN STRUCTURE
Preparing viewer…
PDB6CYO Β· 1.85 Γ… Β· X-ray
View on RCSB β†—
RankingsWhere UBE2A stands among ~20K protein-coding genes
  • #4,211of 20,598
    Most Researched113 Β· top quartile
  • #2,046of 5,498
    Most Pathogenic Variants23
Genes detectedUBE2A
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Mutations in the intellectual disability gene Ube2a cause neuronal dysfunction and impair parkin-dependent mitophagy.
PMID: 23685073
Mol Cell Β· 2013
1.00
2
Genomic landscape of endometrial polyps.
PMID: 41137179
Genome Med Β· 2025
0.90
3
[A large family of Nascimento form of syndromic X-linked intellectual developmental disorder caused by large segment deletion of the
PMID: 40695520
Zhongguo Dang Dai Er Ke Za Zhi Β· 2025
0.80
4
Circular RNA and Alzheimer's Disease.
PMID: 30259371
Adv Exp Med Biol Β· 2018
0.70
5
A RAD18-UBC13-PALB2-RNF168 axis mediates replication fork recovery in BRCA1-deficient cancer cells.
PMID: 38943334
Nucleic Acids Res Β· 2024
0.60