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25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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VDAC3
voltage dependent anion channel 3
Chromosome 8 · 8p11.21
NCBI Gene: 7419Ensembl: ENSG00000078668.15HGNC: HGNC:12674UniProt: Q9Y277
161PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
RESEARCH IMPACT
Trending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
mitochondrionvoltage-gated monoatomic ion channel activityprotein bindingnucleusneurodegenerative diseaseovarian dysfunctionosteoarthritis, kneeazoospermia
✦AI Summary

VDAC3 is a voltage-gated ion channel mediating anion and cation transport across the mitochondrial outer membrane 1. It forms a high-conducting channel with voltage-induced closure showing mild anion preference 1. VDAC3 is central to ferroptosis regulation in cancer. Erastin, a ferroptosis activator, binds directly to VDAC3 and VDAC2, triggering iron-dependent oxidative cell death in RAS-mutant tumors 2. However, cells develop resistance through Nedd4-mediated ubiquitination of VDAC2/3, leading to channel degradation 3. BRCA1 transcriptionally activates VDAC3 and GPX4; BRCA1 deficiency blocks VDAC3 expression, conferring erastin resistance but creating vulnerability to GPX4 inhibition 4. Beyond ferroptosis, VDAC3 participates in mitochondrial quality control—TMX2 recruits parkin to VDAC2/3-containing defective mitochondria to promote cytoprotective mitophagy 5. A circular RNA derived from VDAC3 (crVDAC3) accumulates HSPB1 protein, suppressing ferroptosis and mediating trastuzumab deruxtecan resistance in HER2-low breast cancer 6. Additionally, VDAC3 functions in ER-mitochondria iron crosstalk, interacting with ZIP7 via ACSL4 to regulate mitochondrial iron homeostasis 7. These multifaceted roles position VDAC3 as a therapeutic target for overcoming cancer drug resistance.

Sources cited
1
VDAC3 is a voltage-gated ion channel mediating anion and cation transport with high conductance and voltage-induced closure
PMID: 31935282
2
Erastin binds directly to VDAC3 and VDAC2, inducing oxidative cell death in RAS-mutant tumor cells through mitochondrial mechanism
PMID: 17568748
3
Nedd4 ubiquitinates and degrades VDAC2/3 following erastin treatment, conferring cellular resistance to ferroptosis
PMID: 31974380
4
BRCA1 promotes VDAC3 transcription; BRCA1 deficiency blocks VDAC3 expression, conferring erastin resistance but sensitizing to GPX4 inhibition
PMID: 38552003
5
VDAC3 interacts with TMX2 to assist recruitment of PRKN to defective mitochondria, promoting cytoprotective mitophagy
PMID: 38797513
6
Circular RNA crVDAC3 binds HSPB1 protein and inhibits its ubiquitination, suppressing ferroptosis and mediating T-DXd resistance
PMID: 39243601
7
VDAC3 interacts with ZIP7 via ACSL4 to regulate ER-mitochondria iron transfer and mitochondrial iron homeostasis
PMID: 39579909
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.53Moderate
ovarian dysfunctionOpen Targets
0.28Weak
osteoarthritis, kneeOpen Targets
0.21Weak
azoospermiaOpen Targets
0.10Weak
spermatogenic failure, X-linked, 5Open Targets
0.08Suggestive
spermatogenic failure 72Open Targets
0.08Suggestive
spermatogenic failure 65Open Targets
0.08Suggestive
spermatogenic failure 84Open Targets
0.08Suggestive
spermatogenic failure 93Open Targets
0.08Suggestive
spermatogenic failure 18Open Targets
0.08Suggestive
spermatogenic failure 27Open Targets
0.08Suggestive
spermatogenic failure 46Open Targets
0.08Suggestive
spermatogenic failure 56Open Targets
0.08Suggestive
spermatogenic failure 92Open Targets
0.08Suggestive
spermatogenic failure 94Open Targets
0.08Suggestive
spermatogenic failure 19Open Targets
0.08Suggestive
spermatogenic failure 43Open Targets
0.08Suggestive
spermatogenic failure 45Open Targets
0.08Suggestive
spermatogenic failure 49Open Targets
0.08Suggestive
spermatogenic failure 82Open Targets
0.08Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
TOMM70Protein interaction100%TOMM20Protein interaction100%TOMM40Protein interaction100%ATP5F1AProtein interaction100%ATP5PDProtein interaction100%BCL2L1Protein interaction100%
Tissue Expression6 tissues
Heart
100%
Brain
54%
Bone Marrow
22%
Liver
21%
Lung
19%
Ovary
15%
Gene Interaction Network
Click a node to explore
VDAC3TOMM70TOMM20TOMM40ATP5F1AATP5PDBCL2L1
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q9Y277
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.42Moderately Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.22 [0.13–0.42]
RankingsWhere VDAC3 stands among ~20K protein-coding genes
  • #2,800of 20,598
    Most Researched161 · top quartile
  • #2,241of 17,882
    Most Constrained (LOEUF)0.42 · top quartile
Genes detectedVDAC3
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
Nedd4 ubiquitylates VDAC2/3 to suppress erastin-induced ferroptosis in melanoma.
PMID: 31974380
Nat Commun · 2020
1.00
2
BRCA1-Mediated Dual Regulation of Ferroptosis Exposes a Vulnerability to GPX4 and PARP Co-Inhibition in BRCA1-Deficient Cancers.
PMID: 38552003
Cancer Discov · 2024
0.90
3
TMX2 potentiates cell viability of hepatocellular carcinoma by promoting autophagy and mitophagy.
PMID: 38797513
Autophagy · 2024
0.80
4
RAS-RAF-MEK-dependent oxidative cell death involving voltage-dependent anion channels.
PMID: 17568748
Nature · 2007
0.70
5
Conformational plasticity of mitochondrial VDAC2 controls the kinetics of its interaction with cytosolic proteins.
PMID: 40267181
Sci Adv · 2025
0.60