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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
VRK1
VRK serine/threonine kinase 1
Chromosome 14 Β· 14q32.2
NCBI Gene: 7443Ensembl: ENSG00000100749.10HGNC: HGNC:12718UniProt: A0A7P0T838
141PubMed Papers
22Diseases
0Drugs
96Pathogenic Variants
FUNCTIONAL ROLE
Kinase
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
chromatinGolgi stackprotein bindingCajal bodypontocerebellar hypoplasia type 1Apontocerebellar hypoplasia type 1distal hereditary motor neuropathypontocerebellar hypoplasia
✦AI Summary

VRK1 is a nuclear serine/threonine kinase regulating multiple cellular processes critical for neuronal function and genomic stability. Primary function: VRK1 controls cell cycle progression, chr14 organization, and DNA damage response through phosphorylation of histone H3 at Thr3/Thr4 and histone H2AX, facilitating G0 exit and G2/M transition 1. Mechanism: VRK1 phosphorylates key substrates including p53 at Thr18 (preventing MDM2 interaction), BANF1 (disrupting DNA binding), KAT5 (promoting histone acetyltransferase activity), and COIL (regulating Cajal body assembly) 2. It organizes Cajal bodies essential for RNP complex assembly and neuronal migration 1. Disease relevance: Recessive VRK1 variants cause distal hereditary motor neuropathy, amyotrophic lateral sclerosis, Charcot-Marie-Tooth disease, and spinal muscular atrophy, primarily through impaired Cajal body stability and DNA damage responses 31. Clinical significance: VRK1 is overexpressed in nervous system tumors (glioblastoma, neuroblastoma), enabling therapeutic targeting via synthetic lethality when VRK2 is methylated 45. VRK1 inhibition represents a promising strategy in VRK2-deficient cancers.

Sources cited
1
VRK1 regulates cell cycle progression, chromatin condensation, and Cajal body organization; overexpressed in tumors
PMID: 38753965
2
VRK1 is a nuclear chromatin kinase phosphorylating p53, histones, and DNA damage response proteins; overexpressed with poor prognosis
PMID: 33516791
3
Recessive VRK1 variants cause distal motor neuropathies through Cajal body dysfunction and impaired DNA damage responses
PMID: 37257665
4
VRK1 is essential for survival of gliomas and neuroblastomas with VRK2 promoter methylation; synthetic lethal target
PMID: 36040810
5
VRK1 inhibition causes cell death in VRK2-deficient glioblastoma through BAF phosphorylation defects and G2-M arrest
PMID: 36069976
Disease Associationsβ“˜22
pontocerebellar hypoplasia type 1AOpen Targets
0.76Strong
pontocerebellar hypoplasia type 1Open Targets
0.66Moderate
distal hereditary motor neuropathyOpen Targets
0.60Moderate
pontocerebellar hypoplasiaOpen Targets
0.58Moderate
neuronopathy, distal hereditary motor, autosomal recessive 10Open Targets
0.55Moderate
neurodegenerative diseaseOpen Targets
0.54Moderate
genetic disorderOpen Targets
0.52Moderate
spinal muscular atrophyOpen Targets
0.46Moderate
microcephaly-complex motor and sensory axonal neuropathy syndromeOpen Targets
0.45Moderate
Non-syndromic pontocerebellar hypoplasiaOpen Targets
0.45Moderate
osteitis deformansOpen Targets
0.39Weak
insomniaOpen Targets
0.38Weak
familial amyotrophic lateral sclerosisOpen Targets
0.37Weak
alcohol drinkingOpen Targets
0.34Weak
Abnormality of the musculatureOpen Targets
0.34Weak
EMG: neuropathic changesOpen Targets
0.34Weak
cellulitisOpen Targets
0.33Weak
alopecia areataOpen Targets
0.32Weak
abscessOpen Targets
0.32Weak
diabetic ketoacidosisOpen Targets
0.31Weak
Neuronopathy, distal hereditary motor, autosomal recessive 10UniProt
Pontocerebellar hypoplasia 1AUniProt
Pathogenic Variants96
NM_003384.3(VRK1):c.356A>G (p.His119Arg)Pathogenic
Pontocerebellar hypoplasia type 1A|not provided|Pontocerebellar hypoplasia type 1A;Neuronopathy, distal hereditary motor, autosomal recessive 10
β˜…β˜…β˜†β˜†2026β†’ Residue 119
NM_003384.3(VRK1):c.1160G>A (p.Arg387His)Pathogenic
Inborn genetic diseases|Pontocerebellar hypoplasia type 1A|not provided|Neuronopathy, distal hereditary motor, autosomal recessive 10
β˜…β˜…β˜†β˜†2026β†’ Residue 387
NM_003384.3(VRK1):c.1132_1133insT (p.Thr378fs)Pathogenic
Pontocerebellar hypoplasia type 1A|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 378
NM_003384.3(VRK1):c.1127C>A (p.Ser376Ter)Pathogenic
Pontocerebellar hypoplasia type 1A
β˜…β˜…β˜†β˜†2025β†’ Residue 376
NM_003384.3(VRK1):c.1072C>T (p.Arg358Ter)Pathogenic
Pontocerebellar hypoplasia type 1A|Inborn genetic diseases|not provided|Abnormality of the musculature|Neuronopathy, distal hereditary motor, autosomal recessive 10|Neuronopathy, distal hereditary motor, autosomal recessive 10;Pontocerebellar hypoplasia type 1A
β˜…β˜…β˜†β˜†2025β†’ Residue 358
NM_003384.3(VRK1):c.362_365del (p.Lys121fs)Pathogenic
Pontocerebellar hypoplasia type 1A|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 121
NM_003384.3(VRK1):c.961C>T (p.Arg321Cys)Pathogenic
Pontocerebellar hypoplasia type 1A|Juvenile amyotrophic lateral sclerosis|not provided|Pontocerebellar hypoplasia type 1A;Neuronopathy, distal hereditary motor, autosomal recessive 10
β˜…β˜…β˜†β˜†2025β†’ Residue 321
NM_003384.3(VRK1):c.883_886del (p.Lys295fs)Pathogenic
not provided|Pontocerebellar hypoplasia type 1A|Neuronopathy, distal hereditary motor, autosomal recessive 10;Pontocerebellar hypoplasia type 1A
β˜…β˜…β˜†β˜†2025β†’ Residue 295
NM_003384.3(VRK1):c.216+1G>CLikely pathogenic
Pontocerebellar hypoplasia type 1A|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025
NM_003384.3(VRK1):c.1144_1145insCTCG (p.Glu382fs)Pathogenic
Pontocerebellar hypoplasia type 1A|Pontoneocerebellar hypoplasia
β˜…β˜…β˜†β˜†2025β†’ Residue 382
NM_003384.3(VRK1):c.976C>T (p.Gln326Ter)Pathogenic
Pontocerebellar hypoplasia type 1A|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 326
NM_003384.3(VRK1):c.265C>T (p.Arg89Ter)Pathogenic
Inborn genetic diseases|Pontocerebellar hypoplasia type 1A
β˜…β˜…β˜†β˜†2025β†’ Residue 89
NM_003384.3(VRK1):c.889+1G>TLikely pathogenic
Inborn genetic diseases|Pontocerebellar hypoplasia type 1A
β˜…β˜…β˜†β˜†2025
NM_003384.3(VRK1):c.3dup (p.Pro2fs)Likely pathogenic
Pontocerebellar hypoplasia type 1A;Neuronopathy, distal hereditary motor, autosomal recessive 10|Pontocerebellar hypoplasia type 1A
β˜…β˜…β˜†β˜†2025β†’ Residue 2
NM_003384.3(VRK1):c.788A>G (p.Asp263Gly)Pathogenic
Pontocerebellar hypoplasia type 1A
β˜…β˜…β˜†β˜†2025β†’ Residue 263
NM_003384.3(VRK1):c.1144dup (p.Glu382fs)Pathogenic
Pontocerebellar hypoplasia type 1A|Pontocerebellar hypoplasia type 1A;Neuronopathy, distal hereditary motor, autosomal recessive 10
β˜…β˜…β˜†β˜†2024β†’ Residue 382
NM_003384.3(VRK1):c.1159+1G>APathogenic
not provided|Pontocerebellar hypoplasia type 1A|Neuronopathy, distal hereditary motor, autosomal recessive 10
β˜…β˜…β˜†β˜†2024
NM_003384.3(VRK1):c.222del (p.Ser75fs)Pathogenic
Pontocerebellar hypoplasia type 1A|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 75
NM_003384.3(VRK1):c.502_503del (p.Ile168fs)Pathogenic
Pontocerebellar hypoplasia type 1A
β˜…β˜…β˜†β˜†2024β†’ Residue 168
NM_003384.3(VRK1):c.483+1G>ALikely pathogenic
Pontocerebellar hypoplasia type 1A
β˜…β˜…β˜†β˜†2024
View on ClinVar β†—
Related Genes
H2BC21Protein interaction96%ANKLE2Protein interaction92%BANF1Protein interaction92%H2BC8Protein interaction92%H2BC4Protein interaction91%H2AC17Protein interaction90%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
21%
Heart
9%
Ovary
8%
Lung
7%
Liver
4%
Gene Interaction Network
Click a node to explore
VRK1H2BC21ANKLE2BANF1H2BC8H2BC4H2AC17
PROTEIN STRUCTURE
Preparing viewer…
PDB7M10 Β· 1.15 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.75LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.55 [0.41–0.75]
RankingsWhere VRK1 stands among ~20K protein-coding genes
  • #3,269of 20,598
    Most Researched141 Β· top quartile
  • #804of 5,498
    Most Pathogenic Variants96 Β· top quartile
  • #5,898of 17,882
    Most Constrained (LOEUF)0.75
Genes detectedVRK1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Distal hereditary motor neuropathies.
PMID: 38702287
Rev Neurol (Paris) Β· 2024
1.00
2
A 20-year Clinical and Genetic Neuromuscular Cohort Analysis in Lebanon: An International Effort.
PMID: 34602496
J Neuromuscul Dis Β· 2022
0.90
3
Nuclear functions regulated by the VRK1 kinase.
PMID: 38753965
Nucleus Β· 2024
0.80
4
VRK1 as a synthetic lethal target in VRK2 promoter-methylated cancers of the nervous system.
PMID: 36040810
JCI Insight Β· 2022
0.70
5
VRK1 Is a Synthetic-Lethal Target in VRK2-Deficient Glioblastoma.
PMID: 36069976
Cancer Res Β· 2022
0.60