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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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VTI1B
vesicle transport through interaction with t-SNAREs 1B
Chromosome 14 · 14q24.1
NCBI Gene: 10490Ensembl: ENSG00000100568.12HGNC: HGNC:17793UniProt: Q9UEU0
84PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub GeneTransporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
SNARE complexlate endosome membraneautophagosome maturationSNARE bindingtooth diseaseBlindnesscervical carcinomagallbladder disease 1
✦AI Summary

VTI1B (Vesicle Transport through Interaction with t-SNAREs 1B) is a conserved Q-SNARE protein that mediates intracellular membrane trafficking by providing the Qb SNARE domain to four-helical SNARE bundles required for membrane fusion 1. VTI1B localizes primarily to endosomal compartments, the trans-Golgi network, and tubular structures, where it forms distinct SNARE complexes with syntaxin proteins and VAMP family members to regulate late endosome-to-lysosome fusion and autophagosome maturation 234. Mechanistically, VTI1B stability depends on its interaction partners; deletion of VTI1B leads to syntaxin 8 degradation while other SNARE partners compensate functionally 5. VTI1B participates in antimicrobial autophagy by mediating xenophagosome-lysosome fusion essential for degrading intracellular pathogens 3. Its function is regulated through phosphorylation by PTPN9; dephosphorylation promotes ATG16L1 precursor fusion and autophagosome biogenesis 4. Notably, mycobacterial trehalose dimycolate inhibits phagosome maturation by promoting aberrant VTI1B-VAMP2 complex formation instead of canonical VTI1B-VAMP8 complexes, facilitating intracellular pathogen survival 6. VTI1B dysregulation has been associated with Alzheimer's disease pathology based on altered plasma peptide profiles 7. VTI1B deficiency causes minimal phenotypes in most mice due to functional redundancy, though subtle autophagosomal accumulation occurs in hepatocytes 5.

Sources cited
1
VTI1B is a conserved Q-SNARE providing the Qb SNARE domain to SNARE bundles; regulates endolysosomal trafficking and synaptic vesicle secretion
PMID: 30471354
2
VTI1B localizes to endosomes and TGN; forms distinct SNARE complexes with specific partners
PMID: 12067063
3
VTI1B and VAMP8 mediate fusion of autophagosomes with lysosomes in antimicrobial and canonical autophagy
PMID: 20089838
4
PTPN9 phosphatase dephosphorylates VTI1B to promote ATG16L1 fusion and autophagosome formation
PMID: 33112705
5
Mycobacterial trehalose dimycolate binds VTI1B and promotes aberrant SNARE complexation to inhibit phagosome maturation
PMID: 40354525
6
VTI1B is required for syntaxin 8 protein stability; VTI1B-deficient mice are mostly viable with compensatory SNARE function
PMID: 12861006
7
Syntaxin 11 regulates VTI1B availability to form Q-SNARE complexes required for late endosome-to-lysosome fusion
PMID: 21388490
8
VTI1B peptides show altered plasma frequency in Alzheimer's disease patients
PMID: 34182925
Disease Associationsⓘ20
tooth diseaseOpen Targets
0.27Weak
BlindnessOpen Targets
0.15Weak
cervical carcinomaOpen Targets
0.12Weak
gallbladder disease 1Open Targets
0.05Suggestive
gallbladder diseaseOpen Targets
0.04Suggestive
Isolated polycystic liver diseaseOpen Targets
0.04Suggestive
sclerosing cholangitisOpen Targets
0.03Suggestive
benign recurrent intrahepatic cholestasisOpen Targets
0.03Suggestive
cholelithiasisOpen Targets
0.03Suggestive
polycystic liver disease 3 with or without kidney cystsOpen Targets
0.03Suggestive
polycystic liver disease 4 with or without kidney cystsOpen Targets
0.03Suggestive
Senior-Boichis syndromeOpen Targets
0.03Suggestive
GCGR-related hyperglucagonemiaOpen Targets
0.03Suggestive
progressive familial intrahepatic cholestasis type 3Open Targets
0.03Suggestive
cholestasis, progressive familial intrahepatic, 9Open Targets
0.03Suggestive
Congenital bile acid synthesis defect type 1Open Targets
0.03Suggestive
X-linked erythropoietic protoporphyriaOpen Targets
0.03Suggestive
benign recurrent intrahepatic cholestasis type 2Open Targets
0.03Suggestive
hyperbiliverdinemiaOpen Targets
0.03Suggestive
congenital bile acid synthesis defect 3Open Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
STX1AProtein interaction100%VPS11Protein interaction100%VPS41Protein interaction100%VPS39Protein interaction100%VPS16Protein interaction100%AGFG1Protein interaction100%
Tissue Expression6 tissues
Heart
100%
Brain
95%
Liver
57%
Lung
50%
Bone Marrow
50%
Ovary
39%
Gene Interaction Network
Click a node to explore
VTI1BSTX1AVPS11VPS41VPS39VPS16AGFG1
PROTEIN STRUCTURE
Preparing viewer…
PDB2V8S · 2.22 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.89LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.58 [0.39–0.89]
RankingsWhere VTI1B stands among ~20K protein-coding genes
  • #5,706of 20,598
    Most Researched84
  • #7,938of 17,882
    Most Constrained (LOEUF)0.89
Genes detectedVTI1B
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
The plasma peptides of Alzheimer's disease.
PMID: 34182925
Clin Proteomics · 2021
1.00
2
Vti Proteins: Beyond Endolysosomal Trafficking.
PMID: 30471354
Neuroscience · 2019
0.90
3
Trehalose dimycolate inhibits phagosome maturation and promotes intracellular
PMID: 40354525
Proc Natl Acad Sci U S A · 2025
0.80
4
Syntaxin 11 binds Vti1b and regulates late endosome to lysosome fusion in macrophages.
PMID: 21388490
Traffic · 2011
0.70
5
Deletion of the SNARE vti1b in mice results in the loss of a single SNARE partner, syntaxin 8.
PMID: 12861006
Mol Cell Biol · 2003
0.60