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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
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XYLT1
xylosyltransferase 1
Chromosome 16 Β· 16p12.3
NCBI Gene: 64131Ensembl: ENSG00000103489.13HGNC: HGNC:15516UniProt: Q86Y38
62PubMed Papers
2Diseases
0Drugs
25Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
GO:0005615chondroitin sulfate proteoglycan biosynthetic processGolgi apparatusGolgi membraneDesbuquois dysplasia 2Pseudoxanthoma elasticum
✦AI Summary

XYLT1 (xylosyltransferase 1) is a Golgi-localized glycosyltransferase that catalyzes the first step in chondroitin sulfate and dermatan sulfate proteoglycan biosynthesis by transferring D-xylose from UDP-D-xylose to serine residues on core proteins 1. The enzyme is essential for normal skeletal development, particularly long bone formation and chondrocyte maturation during ossification 2. XYLT1 deficiency causes Desbuquois dysplasia 2, characterized by impaired chondrogenic differentiation of mesenchymal stem cells, with disrupted extracellular matrix expression and premature chondrocyte hypertrophy 3. Beyond skeletal biology, XYLT1 participates in proteoglycan-mediated signaling: it post-translationally modifies biglycan to serve as a TLR3 ligand, activating interferon signaling in calcific aortic valve disease 4. In cancer biology, XYLT1 upregulation promotes early-stage lung adenocarcinoma metastasis by facilitating sulfated glycosaminoglycan conjugation of IΞΊBΞ±, enhancing NF-ΞΊB pathway activation 5. XYLT1 is transcriptionally regulated by AP-1 and Sp1 family transcription factors 6, and its expression is elevated during hepatic fibrosis where it promotes fibroblast proliferation and migration 7. These findings establish XYLT1 as a multifunctional regulator of skeletal homeostasis, inflammatory signaling, and pathological tissue remodeling.

Sources cited
1
XYLT1 catalyzes transfer of D-xylose from UDP-D-xylose to serine residues in proteoglycan biosynthesis
PMID: 15461586
2
XYLT1 is required for normal embryonic and postnatal skeletal development and bone formation
PMID: 23982343
3
XYLT1 deficiency impairs chondrogenic differentiation with disrupted matrix expression and premature chondrocyte hypertrophy
PMID: 40806493
4
XYLT1 post-translationally modifies biglycan to activate TLR3-mediated calcification in aortic valve disease
PMID: 37013819
5
XYLT1 promotes lung adenocarcinoma metastasis by facilitating NF-ΞΊB activation through IΞΊBΞ± modification
PMID: 39992715
6
XYLT1 gene transcription is regulated by AP-1 and Sp1 family transcription factors
PMID: 19762916
7
XYLT1 expression is elevated in hepatic fibrosis and promotes fibroblast proliferation and migration
PMID: 36871637
Disease Associationsβ“˜2
Desbuquois dysplasia 2UniProt
Pseudoxanthoma elasticumUniProt
Pathogenic Variants25
NM_022166.4(XYLT1):c.2122_2123del (p.Ala708fs)Pathogenic
not provided|Desbuquois dysplasia 1
β˜…β˜…β˜†β˜†2024β†’ Residue 708
NM_022166.4(XYLT1):c.1651C>T (p.Arg551Cys)Pathogenic
not provided|Desbuquois dysplasia 2
β˜…β˜…β˜†β˜†2023β†’ Residue 551
NM_022166.4(XYLT1):c.402+1G>TLikely pathogenic
Desbuquois dysplasia 1
β˜…β˜†β˜†β˜†2025
NM_022166.4(XYLT1):c.1245del (p.Trp416fs)Pathogenic
Desbuquois dysplasia 1
β˜…β˜†β˜†β˜†2025β†’ Residue 416
NM_022166.4(XYLT1):c.2026C>T (p.Arg676Ter)Pathogenic
Desbuquois dysplasia 1
β˜…β˜†β˜†β˜†2024β†’ Residue 676
NM_022166.4(XYLT1):c.2169dup (p.Val724fs)Likely pathogenic
Desbuquois dysplasia 2
β˜…β˜†β˜†β˜†2024β†’ Residue 724
NM_022166.4(XYLT1):c.1629del (p.Asp543fs)Pathogenic
Desbuquois dysplasia 1
β˜…β˜†β˜†β˜†2024β†’ Residue 543
NM_022166.4(XYLT1):c.1108C>T (p.Gln370Ter)Pathogenic
Desbuquois dysplasia 2
β˜…β˜†β˜†β˜†2024β†’ Residue 370
NM_022166.4(XYLT1):c.1730_1733dup (p.Asp578delinsGluTer)Pathogenic
not provided|Desbuquois dysplasia 2
β˜…β˜†β˜†β˜†2024β†’ Residue 578
NM_022166.4(XYLT1):c.578del (p.Leu192_Leu193insTer)Likely pathogenic
Desbuquois dysplasia 2
β˜…β˜†β˜†β˜†2024β†’ Residue 192
NM_022166.4(XYLT1):c.1510G>T (p.Glu504Ter)Pathogenic
Desbuquois dysplasia 1
β˜…β˜†β˜†β˜†2023β†’ Residue 504
NM_022166.4(XYLT1):c.-110_280del (p.Met1_Gln94del)Pathogenic
Desbuquois dysplasia 1
β˜…β˜†β˜†β˜†2023β†’ Residue 1
NM_022166.4(XYLT1):c.439C>T (p.Arg147Ter)Pathogenic
Desbuquois dysplasia 2|Desbuquois dysplasia 1
β˜…β˜†β˜†β˜†2023β†’ Residue 147
NM_022166.4(XYLT1):c.2462G>A (p.Trp821Ter)Pathogenic
Desbuquois dysplasia 1
β˜…β˜†β˜†β˜†2022β†’ Residue 821
NM_022166.4(XYLT1):c.1321C>T (p.Arg441Ter)Pathogenic
Desbuquois dysplasia 1
β˜…β˜†β˜†β˜†2019β†’ Residue 441
NM_022166.4(XYLT1):c.62del (p.Ala21fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2018β†’ Residue 21
NC_000016.10:g.(?_17108675)_(17470816_?)delPathogenic
Desbuquois dysplasia 1
β˜…β˜†β˜†β˜†2017
NM_022166.4(XYLT1):c.2560G>T (p.Glu854Ter)Likely pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2016β†’ Residue 854
NW_019805500.1:g.472169CCG[(100-833)]Pathogenic
Desbuquois dysplasia 2
β˜†β˜†β˜†β˜†2025
NM_022166.4(XYLT1):c.281_306del (p.Gln94fs)Pathogenic
Desbuquois dysplasia 2
β˜†β˜†β˜†β˜†2019β†’ Residue 94
View on ClinVar β†—
Related Genes
ABCC6Protein interaction95%B4GALT7Protein interaction95%SDC1Protein interaction95%NOMO3Protein interaction92%LOC102723728Protein interaction85%FAM20BProtein interaction75%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
Click a node to explore
XYLT1ABCC6B4GALT7SDC1NOMO3LOC102723728FAM20B
PROTEIN STRUCTURE
Preparing viewer…
PDB6FOA Β· 1.87 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.48Moderately Constrained
pLIβ“˜
0.99Intolerant
Observed/Expected LoF0.35 [0.27–0.48]
RankingsWhere XYLT1 stands among ~20K protein-coding genes
  • #7,524of 20,598
    Most Researched62
  • #1,984of 5,498
    Most Pathogenic Variants25
  • #2,779of 17,882
    Most Constrained (LOEUF)0.48 Β· top quartile
Genes detectedXYLT1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
The Glycosyltransferase XYLT1 Activates NF-ΞΊB Signaling to Promote Metastasis of Early-Stage Lung Adenocarcinoma.
PMID: 39992715
Cancer Res Β· 2025
1.00
2
Toll-Like Receptor 3 Mediates Aortic Stenosis Through a Conserved Mechanism of Calcification.
PMID: 37013819
Circulation Β· 2023
0.90
3
Unravelling the link between neurodevelopmental disorders and short tandem CGG-repeat expansions.
PMID: 37768318
Emerg Top Life Sci Β· 2023
0.80
4
What is new in CDG?
PMID: 28484880
J Inherit Metab Dis Β· 2017
0.70
5
PMID: 40806493
Int J Mol Sci Β· 2025
0.60