HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
YRDC
yrdC N6-threonylcarbamoyltransferase domain containing
Chromosome 1 Β· 1p34.3
NCBI Gene: 79693Ensembl: ENSG00000196449.5HGNC: HGNC:28905UniProt: Q86U90
30PubMed Papers
21Diseases
0Drugs
4Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
tRNA threonylcarbamoyladenosine modificationnegative regulation of transportcytoplasmprotein bindingGalloway-Mowat syndrome 10Galloway-Mowat syndromerheumatoid arthritisskin cancer
✦AI Summary

YRDC (yrdC N6-threonylcarbamoyltransferase domain containing) is a cytoplasmic and mitochondrial enzyme that catalyzes formation of N6-threonylcarbamoyladenosine (t6A) at position 37 of transfer RNAs (tRNAs) that decode codons beginning with adenine 1. The enzyme converts L-threonine, bicarbonate/CO2, and ATP to generate threonylcarbamoyl-AMP as an acyladenylate intermediate, releasing diphosphate 1. This modification is essential for proper translation fidelity and regulation of translational efficiency 2. YRDC operates within the conserved KEOPS complex in eukaryotes, cooperating with other subunits to achieve t6A biosynthesis 2. The enzyme is ubiquitously expressed across human tissues and highly evolutionarily conserved 3. Clinically, YRDC is dysregulated across multiple cancer types and associated with worse prognosis 4. In glioblastoma stem cells, YRDC is essential for elevated protein translation and tumor growth, with threonine accumulation facilitating t6A-mediated codon-biased translational reprogramming toward mitosis-related genes 5. YRDC promotes hepatocellular carcinoma progression via MEK/ERK signaling 6 and drives EGFR-TKI resistance in non-small cell lung cancer through regulated YRDC translation 7. Mutations in YRDC cause Galloway-Mowat syndrome 10, highlighting its critical cellular importance.

Sources cited
1
YRDC (yrdC N6-threonylcarbamoyltransferase domain containing) is a cytoplasmic and mitochondrial enzyme that catalyzes formation of N6-threonylcarbamoyladenosine (t6A) at position 37 of transfer RNAs (tRNAs) that decode codons beginning with adenine .
PMID: 29760464
2
This modification is essential for proper translation fidelity and regulation of translational efficiency .
PMID: 38477398
3
The enzyme is ubiquitously expressed across human tissues and highly evolutionarily conserved .
PMID: 12730717
4
Clinically, YRDC is dysregulated across multiple cancer types and associated with worse prognosis .
PMID: 40898423
5
In glioblastoma stem cells, YRDC is essential for elevated protein translation and tumor growth, with threonine accumulation facilitating t6A-mediated codon-biased translational reprogramming toward mitosis-related genes .
PMID: 38519786
6
YRDC promotes hepatocellular carcinoma progression via MEK/ERK signaling and drives EGFR-TKI resistance in non-small cell lung cancer through regulated YRDC translation .
PMID: 30978526
7
YRDC promotes hepatocellular carcinoma progression via MEK/ERK signaling and drives EGFR-TKI resistance in non-small cell lung cancer through regulated YRDC translation .
PMID: 36435452
Disease Associationsβ“˜21
Galloway-Mowat syndrome 10Open Targets
0.69Moderate
Galloway-Mowat syndromeOpen Targets
0.46Moderate
rheumatoid arthritisOpen Targets
0.11Weak
skin cancerOpen Targets
0.11Weak
neoplasmOpen Targets
0.08Suggestive
systemic lupus erythematosusOpen Targets
0.08Suggestive
non-small cell lung carcinomaOpen Targets
0.08Suggestive
autoimmune diseaseOpen Targets
0.08Suggestive
hepatocellular carcinomaOpen Targets
0.06Suggestive
actinic keratosisOpen Targets
0.05Suggestive
cancerOpen Targets
0.05Suggestive
migraine disorderOpen Targets
0.05Suggestive
cutaneous melanomaOpen Targets
0.05Suggestive
mathematical abilityOpen Targets
0.03Suggestive
osteosarcomaOpen Targets
0.03Suggestive
lung adenocarcinomaOpen Targets
0.02Suggestive
chronic obstructive pulmonary diseaseOpen Targets
0.02Suggestive
urinary bladder carcinomaOpen Targets
0.02Suggestive
adrenal cortex carcinomaOpen Targets
0.01Suggestive
cervical squamous cell carcinomaOpen Targets
0.01Suggestive
Galloway-Mowat syndrome 10UniProt
Pathogenic Variants4
NM_024640.4(YRDC):c.251C>T (p.Ala84Val)Pathogenic
Galloway-Mowat syndrome 10
β˜†β˜†β˜†β˜†2021β†’ Residue 84
NM_024640.4(YRDC):c.721_724del (p.Val241fs)Pathogenic
Galloway-Mowat syndrome 10
β˜†β˜†β˜†β˜†2021β†’ Residue 241
NM_024640.4(YRDC):c.791TCC[1] (p.Leu265del)Pathogenic
Galloway-Mowat syndrome 10
β˜†β˜†β˜†β˜†2021β†’ Residue 265
NM_024640.4(YRDC):c.662T>C (p.Ile221Thr)Pathogenic
Galloway-Mowat syndrome 10
β˜†β˜†β˜†β˜†2021β†’ Residue 221
View on ClinVar β†—
Related Genes
TP53RKProtein interaction100%LAGE3Protein interaction98%RBBP9Protein interaction90%PUDPProtein interaction85%OSGEPL1Protein interaction81%SPIN1Protein interaction78%
Tissue Expression6 tissues
Bone Marrow
100%
Liver
24%
Brain
24%
Lung
18%
Heart
12%
Ovary
12%
Gene Interaction Network
Click a node to explore
YRDCTP53RKLAGE3RBBP9PUDPOSGEPL1SPIN1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q86U90
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.26LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.86 [0.60–1.26]
RankingsWhere YRDC stands among ~20K protein-coding genes
  • #12,071of 20,598
    Most Researched30
  • #3,835of 5,498
    Most Pathogenic Variants4
  • #13,273of 17,882
    Most Constrained (LOEUF)1.26
Genes detectedYRDC
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Threonine fuels glioblastoma through YRDC-mediated codon-biased translational reprogramming.
PMID: 38519786
Nat Cancer Β· 2024
1.00
2
Isolation and identification of a novel cDNA that encodes human yrdC protein.
PMID: 12730717
J Hum Genet Β· 2003
0.90
3
Molecular basis of A. thaliana KEOPS complex in biosynthesizing tRNA t6A.
PMID: 38477398
Nucleic Acids Res Β· 2024
0.80
4
YRDC is a Prognostic-Related Biomarker Correlated With Immune Infiltration and Drug Sensitivity in Pan-Cancer.
PMID: 40898423
Cancer Rep (Hoboken) Β· 2025
0.70
5
A novel circular RNA circRBMS3 regulates proliferation and metastasis of osteosarcoma by targeting miR-424-eIF4B/YRDC axis.
PMID: 36897170
Aging (Albany NY) Β· 2023
0.60