HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
25 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
ZAP70
zeta chain of T cell receptor associated protein kinase 70
Chromosome 2 Β· 2q11.2
NCBI Gene: 7535Ensembl: ENSG00000115085.17HGNC: HGNC:12858UniProt: P43403
384PubMed Papers
2Diseases
0Drugs
39Pathogenic Variants
FUNCTIONAL ROLE
Hub GeneKinase
RESEARCH IMPACT
Highly Studied
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
membrane raftpeptidyl-tyrosine phosphorylationT cell activationT cell receptor complexImmunodeficiency 48Autoimmune disease, multisystem, infantile-onset, 2
✦AI Summary

ZAP70 is a cytoplasmic protein tyrosine kinase that serves as a master regulator of adaptive immunity, functioning at the critical intersection of multiple signaling pathways controlling T and B lymphocyte development and activation 1. Upon T cell receptor (TCR) engagement by antigen-presenting cells, phosphorylation of TCR components CD3 and CD247 recruits ZAP70 to the plasma membrane through ITAM motifs, where Lck-mediated phosphorylation relieves its autoinhibited state 2. ZAP70 subsequently phosphorylates essential adapter proteins LAT and LCP2, initiating downstream signaling cascades that promote lymphokine production, T cell proliferation, and differentiation 2. Beyond activation, ZAP70 regulates the TCR activation switch through interactions with ubiquitin ligase CBL, controlling TCR internalization and surface expression 1. CD28 co-stimulation enhances ZAP70 recruitment and activation kinetics by accelerating Lck dynamics in TCR microclusters, potentially lowering activation thresholds 3. ZAP70 deficiency causes severe combined immunodeficiency with reduced CD8+ T cells and nonfunctional CD4+ T cells 4, while partial defects associate with autoimmunity and altered immune tolerance 1. ZAP70 polymorphisms contribute to type 1 diabetes susceptibility 5, and aberrant expression in B-cell chr2 lymphocytic leukemia correlates with poor prognosis 1, highlighting ZAP70's critical role in balancing effective immunity against pathogenic tolerance and malignancy.

Sources cited
1
ZAP70 is a master regulator at the crossroads of signaling pathways controlling T cell development; ZAP70 mutations cause severe T cell immunodeficiency; partial defects associate with autoimmunity and abnormal expression in chronic lymphocytic leukemia predicts poor prognosis
PMID: 20135127
2
ZAP70 is a cytoplasmic tyrosine kinase required for initiating canonical TCR signaling pathways; structure-based insights into ZAP70 regulation and substrate specificity; mutations cause immunodeficiency to autoimmunity disease spectrum
PMID: 29237129
3
CD28 co-stimulation accelerates ZAP70 recruitment to TCRΞΆ chains and increases ZAP70 activation by enhancing Lck recruitment to TCR microclusters
PMID: 39776902
4
ZAP70 mutations in SH2 domains impair TCR-ΞΆ binding and cause combined immunodeficiency with CD8 lymphopenia; structural modeling reveals critical arginine residues forming phosphorylated TCR-ΞΆ binding pocket
PMID: 37313400
5
ZAP70 gene polymorphisms are associated with type 1 diabetes risk in Tunisian population, confirming role in T cell activation pathway in disease pathogenesis
PMID: 25448703
Disease Associationsβ“˜2
Autoimmune disease, multisystem, infantile-onset, 2UniProt
Immunodeficiency 48UniProt
Pathogenic Variants39
NM_001079.4(ZAP70):c.109C>G (p.Arg37Gly)Pathogenic
Severe combined immunodeficiency disease|Combined immunodeficiency due to ZAP70 deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 37
NM_001079.4(ZAP70):c.1624-11G>APathogenic
Combined immunodeficiency due to ZAP70 deficiency|not provided|ZAP70-related disorder|Severe combined immunodeficiency disease
β˜…β˜…β˜†β˜†2025
NM_001079.4(ZAP70):c.1393C>T (p.Arg465Cys)Likely pathogenic
Combined immunodeficiency due to ZAP70 deficiency|Severe combined immunodeficiency disease|Autoimmune disease, multisystem, infantile-onset, 2;Combined immunodeficiency due to ZAP70 deficiency
β˜…β˜…β˜†β˜†2024β†’ Residue 465
NM_001079.4(ZAP70):c.1561G>A (p.Asp521Asn)Likely pathogenic
Severe combined immunodeficiency disease
β˜…β˜†β˜†β˜†2025β†’ Residue 521
NM_001079.4(ZAP70):c.1244_1253del (p.Glu415fs)Pathogenic
Combined immunodeficiency due to ZAP70 deficiency
β˜…β˜†β˜†β˜†2025β†’ Residue 415
NM_001079.4(ZAP70):c.1529_1532dup (p.Ile511fs)Pathogenic
Combined immunodeficiency due to ZAP70 deficiency
β˜…β˜†β˜†β˜†2025β†’ Residue 511
NM_001079.4(ZAP70):c.402+1G>ALikely pathogenic
Combined immunodeficiency due to ZAP70 deficiency
β˜…β˜†β˜†β˜†2025
NM_001079.4(ZAP70):c.919_931del (p.Pro307fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 307
NM_001079.4(ZAP70):c.1505C>T (p.Pro502Leu)Likely pathogenic
Combined immunodeficiency due to ZAP70 deficiency
β˜…β˜†β˜†β˜†2025β†’ Residue 502
NM_001079.4(ZAP70):c.475G>T (p.Glu159Ter)Pathogenic
Combined immunodeficiency due to ZAP70 deficiency
β˜…β˜†β˜†β˜†2025β†’ Residue 159
NM_001079.4(ZAP70):c.845_846del (p.Arg282fs)Pathogenic
Combined immunodeficiency due to ZAP70 deficiency
β˜…β˜†β˜†β˜†2024β†’ Residue 282
NM_001079.4(ZAP70):c.252C>A (p.Cys84Ter)Pathogenic
Combined immunodeficiency due to ZAP70 deficiency
β˜…β˜†β˜†β˜†2024β†’ Residue 84
NM_001079.4(ZAP70):c.1083-1G>ALikely pathogenic
Combined immunodeficiency due to ZAP70 deficiency
β˜…β˜†β˜†β˜†2024
NM_001079.4(ZAP70):c.1690T>C (p.Cys564Arg)Likely pathogenic
Combined immunodeficiency due to ZAP70 deficiency
β˜…β˜†β˜†β˜†2024β†’ Residue 564
NM_001079.4(ZAP70):c.1510_1522del (p.Lys504fs)Pathogenic
Combined immunodeficiency due to ZAP70 deficiency
β˜…β˜†β˜†β˜†2024β†’ Residue 504
NM_001079.4(ZAP70):c.83dup (p.Met29fs)Likely pathogenic
Combined immunodeficiency due to ZAP70 deficiency;Autoimmune disease, multisystem, infantile-onset, 2
β˜…β˜†β˜†β˜†2024β†’ Residue 29
NM_001079.4(ZAP70):c.392G>A (p.Trp131Ter)Pathogenic
Combined immunodeficiency due to ZAP70 deficiency
β˜…β˜†β˜†β˜†2024β†’ Residue 131
NM_001079.4(ZAP70):c.1518C>A (p.Tyr506Ter)Pathogenic
Combined immunodeficiency due to ZAP70 deficiency
β˜…β˜†β˜†β˜†2024β†’ Residue 506
NM_001079.4(ZAP70):c.1258_1261del (p.Gly420fs)Pathogenic
Combined immunodeficiency due to ZAP70 deficiency
β˜…β˜†β˜†β˜†2024β†’ Residue 420
NM_001079.4(ZAP70):c.1228del (p.Leu410fs)Pathogenic
Combined immunodeficiency due to ZAP70 deficiency
β˜…β˜†β˜†β˜†2024β†’ Residue 410
View on ClinVar β†—
Related Genes
CBLProtein interaction100%FCER1GProtein interaction100%GRB2Protein interaction100%PLCG1Protein interaction100%PTPN6Protein interaction100%SHC1Protein interaction100%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
Click a node to explore
ZAP70CBLFCER1GGRB2PLCG1PTPN6SHC1
PROTEIN STRUCTURE
Preparing viewer…
PDB7SIY Β· 1.48 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.62LoF Tolerant
pLIβ“˜
0.01Tolerant
Observed/Expected LoF0.46 [0.34–0.62]
RankingsWhere ZAP70 stands among ~20K protein-coding genes
  • #781of 20,598
    Most Researched384 Β· top 5%
  • #1,555of 5,498
    Most Pathogenic Variants39
  • #4,378of 17,882
    Most Constrained (LOEUF)0.62 Β· top quartile
Genes detectedZAP70
Sources retrieved25 papers
Response timeβ€”
πŸ“„ Sources
25β–Ό
1
ZAP70: a master regulator of adaptive immunity.
PMID: 20135127
Semin Immunopathol Β· 2010
1.00
2
Human NK Cells Downregulate Zap70 and Syk in Response to Prolonged Activation or DNA Damage.
PMID: 29263215
J Immunol Β· 2018
0.90
3
Association of TCR/CD3, PTPN22, CD28 and ZAP70 gene polymorphisms with type 1 diabetes risk in Tunisian population: family based association study.
PMID: 25448703
Immunol Lett Β· 2015
0.80
4
SYK negatively regulates ITAM-mediated human NK cell signaling and CD19-CAR NK cell efficacy.
PMID: 40073103
J Immunol Β· 2025
0.70
5
Natural isoaspartyl protein modification of ZAP70 alters T cell responses in lupus.
PMID: 37994408
Autoimmunity Β· 2023
0.64