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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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ZGPAT
zinc finger CCCH-type and G-patch domain containing
Chromosome 20 · 20q13.33
NCBI Gene: 84619Ensembl: ENSG00000197114.13HGNC: HGNC:15948UniProt: A0A0S2Z5X3
62PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleusnucleoplasmDNA-binding transcription repressor activity, RNA polymerase II-specificnegative regulation of epidermal growth factor-activated receptor activitymetabolic syndromeatopic eczemadermatitisasthma
✦AI Summary

ZGPAT (zinc finger CCCH-type and G-patch domain containing) is a transcriptional regulatory protein that functions as a transcriptional repressor through chr20-mediated mechanisms. The protein contains zinc finger CCCH-type and G-patch domains and localizes to the nucleus and nucleoplasm where it binds to chr20 and regulates RNA polymerase II-mediated transcription [UniProt]. ZGPAT acts as a transcriptional repressor that can be sequestered by long non-coding RNAs, thereby relieving its repressive effects on target genes. Specifically, PAXIP1-AS1 lncRNA upregulates CNTNAP3 expression by sequestering ZGPAT, preventing its transcriptional repression 1. The gene has clinical relevance in multiple disease contexts. Genetic variants in the TNFRSF6B-ZGPAT locus show significant associations with atopic dermatitis susceptibility, with SNP rs6010620 demonstrating interaction effects with other genetic variants 23. Additionally, DNA methylation at a CpG site within ZGPAT (cg14083603) shows sex-specific longitudinal associations with lung function, suggesting epigenetic regulation of this locus may influence respiratory phenotypes 4. ZGPAT has also been identified as a CAR T cell integration site in T cell lymphoma cases 5.

Sources cited
1
PAXIP1-AS1 lncRNA upregulates CNTNAP3 by sequestering the transcriptional repressor ZGPAT
PMID: 40911142
2
SNP rs6010620 in TNFRSF6B-ZGPAT locus shows significant interactions with other variants conferring atopic dermatitis susceptibility
PMID: 25711310
3
TNFRSF6B-ZGPAT locus is a validated susceptibility locus for atopic dermatitis
PMID: 23042114
4
DNA methylation at cg14083603 in ZGPAT shows sex-specific longitudinal associations with lung function
PMID: 34235211
5
ZGPAT is identified as a CAR T cell integration site in T cell lymphoma
PMID: 39984633
Disease Associationsⓘ20
metabolic syndromeOpen Targets
0.14Weak
atopic eczemaOpen Targets
0.13Weak
dermatitisOpen Targets
0.12Weak
asthmaOpen Targets
0.11Weak
inflammatory bowel diseaseOpen Targets
0.09Suggestive
WheezingOpen Targets
0.08Suggestive
ulcerative colitisOpen Targets
0.08Suggestive
Crohn's diseaseOpen Targets
0.07Suggestive
dermatophytosisOpen Targets
0.07Suggestive
Abnormality of the skeletal systemOpen Targets
0.07Suggestive
type 2 diabetes mellitusOpen Targets
0.06Suggestive
prostate carcinomaOpen Targets
0.06Suggestive
Abnormality of refractionOpen Targets
0.06Suggestive
lower respiratory tract diseaseOpen Targets
0.06Suggestive
retinopathyOpen Targets
0.06Suggestive
retinoschisisOpen Targets
0.06Suggestive
Eczematoid dermatitisOpen Targets
0.06Suggestive
diverticular diseaseOpen Targets
0.06Suggestive
dermatomycosisOpen Targets
0.06Suggestive
actinic keratosisOpen Targets
0.06Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
GPRC5AShared pathway100%PRPF4Protein interaction100%E4F1Protein interaction78%LIME1Protein interaction71%ZFYVE28Shared pathway50%SOCS4Shared pathway25%
Tissue Expression6 tissues
Liver
100%
Bone Marrow
88%
Lung
76%
Ovary
63%
Heart
18%
Brain
14%
Gene Interaction Network
Click a node to explore
ZGPATGPRC5APRPF4E4F1LIME1ZFYVE28SOCS4
PROTEIN STRUCTURE
Preparing viewer…
PDB4II1 · 2.65 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.10LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.84 [0.65–1.10]
RankingsWhere ZGPAT stands among ~20K protein-coding genes
  • #7,526of 20,598
    Most Researched62
  • #11,244of 17,882
    Most Constrained (LOEUF)1.10
Genes detectedZGPAT
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Multiomic profiling of T cell lymphoma after therapy with anti-BCMA CAR T cells and GPRC5D-directed bispecific antibody.
PMID: 39984633
Nat Med · 2025
1.00
2
Sex-specific longitudinal association of DNA methylation with lung function.
PMID: 34235211
ERJ Open Res · 2021
0.90
3
[Transport and Toxicity of Cadmium].
PMID: 30270291
Nihon Eiseigaku Zasshi · 2018
0.80
4
Allele-Specific Regulation of PAXIP1-AS1 by SMC3/CEBPB at rs112651172 in Psychiatric Disorders Drives Synaptic and Behavioral Dysfunctions in Mice.
PMID: 40911142
Adv Sci (Weinh) · 2025
0.70
5
The Functions of Metallothionein and ZIP and ZnT Transporters: An Overview and Perspective.
PMID: 26959009
Int J Mol Sci · 2016
0.60