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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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ZNF410
zinc finger protein 410
Chromosome 14 · 14q24.3
NCBI Gene: 57862Ensembl: ENSG00000119725.22HGNC: HGNC:20144UniProt: Q53FM1
26PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
RNA polymerase II cis-regulatory region sequence-specific DNA bindingDNA-binding transcription factor activityprotein bindingsequence-specific double-stranded DNA bindingcholelithiasisAbnormality of the skeletal systemcoronary artery diseasebreast cancer
✦AI Summary

ZNF410 is a zinc finger transcription factor that functions as a highly selective regulator of fetal hemoglobin (HbF) expression in erythroid cells 12. Unlike typical transcription factors that regulate numerous genes, ZNF410 uniquely dedicates itself to activating a single target: CHD4, a core component of the NuRD chr14 remodeling complex 12. ZNF410 binds to two evolutionarily conserved clusters containing 27 combined binding motifs near the CHD4 locus with no counterparts elsewhere in the genome 2. This binding recruits the SWI/SNF complex to maintain chr14 accessibility and enhance CHD4 expression 3. By activating CHD4, ZNF410 indirectly represses the fetal globin genes HBG1 and HBG2, maintaining their silenced state in adult erythroid cells 12. Loss of ZNF410 reduces CHD4 levels by approximately 60%, sufficient to substantially de-repress HbF while avoiding cellular toxicity 2. Clinically, ZNF410 represents a promising therapeutic target for β-hemoglobinopathies, as its inhibition can reactivate HbF expression to ameliorate sickle cell disease and thalassemia 45. Recent evidence demonstrates that CHD4-associated enhancer RNAs modulate this regulatory pathway, adding complexity to the epigenetic mechanisms controlling hemoglobin switching 6.

Sources cited
1
ZNF410 directly activates only CHD4 in erythroid cells and represses fetal hemoglobin genes
PMID: 33301730
2
ZNF410 represses fetal globin by singular control of CHD4; contains unique genomic clusters with 27 binding motifs
PMID: 33859416
3
SWI/SNF complex mediates cooperative ZNF410 binding to control CHD4 enhancer activity and chromatin accessibility
PMID: 40158221
4
Targeting ZNF410 along with BCL11A enhances HbF induction for treating β-hemoglobinopathies
PMID: 35526095
5
ZNF410 is being investigated as a new HbF modulator for genome editing approaches in β-hemoglobinopathies
PMID: 37298481
6
CHD4 enhancer RNAs and ZNF410 binding sites interact to regulate HbF expression through epigenetic mechanisms
PMID: 38325179
Disease Associationsⓘ20
cholelithiasisOpen Targets
0.19Weak
Abnormality of the skeletal systemOpen Targets
0.12Weak
coronary artery diseaseOpen Targets
0.04Suggestive
breast cancerOpen Targets
0.04Suggestive
type 2 diabetes mellitusOpen Targets
0.03Suggestive
leprosyOpen Targets
0.03Suggestive
polycystic ovary syndromeOpen Targets
0.03Suggestive
asthmaOpen Targets
0.02Suggestive
osteoporosisOpen Targets
0.02Suggestive
cervical cancerOpen Targets
0.02Suggestive
hepatocellular carcinomaOpen Targets
0.02Suggestive
benign prostatic hyperplasiaOpen Targets
0.02Suggestive
melanomaOpen Targets
0.01Suggestive
fetal growth restrictionOpen Targets
0.01Suggestive
pulmonary tuberculosisOpen Targets
0.01Suggestive
tuberculosis, spinalOpen Targets
0.01Suggestive
lung cancerOpen Targets
0.01Suggestive
alcohol abuseOpen Targets
0.01Suggestive
type 1 diabetes mellitusOpen Targets
0.01Suggestive
vitamin D deficiencyOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
TCEAL1Shared pathway100%CNPY2Shared pathway100%SFMBT2Shared pathway100%PARP15Shared pathway50%ZNF540Shared pathway50%ZNF503Shared pathway50%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
58%
Brain
57%
Liver
37%
Lung
37%
Heart
9%
Gene Interaction Network
Click a node to explore
ZNF410TCEAL1CNPY2SFMBT2PARP15ZNF540ZNF503
PROTEIN STRUCTURE
Preparing viewer…
PDB6WMI · 2.75 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.47Moderately Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.32 [0.22–0.47]
RankingsWhere ZNF410 stands among ~20K protein-coding genes
  • #12,927of 20,598
    Most Researched26
  • #2,720of 17,882
    Most Constrained (LOEUF)0.47 · top quartile
Genes detectedZNF410
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
SWI/SNF complex-mediated ZNF410 cooperative binding maintains chromatin accessibility and enhancer activity.
PMID: 40158221
Cell Rep · 2025
1.00
2
Precision Editing as a Therapeutic Approach for β-Hemoglobinopathies.
PMID: 37298481
Int J Mol Sci · 2023
0.90
3
Development of a double shmiR lentivirus effectively targeting both BCL11A and ZNF410 for enhanced induction of fetal hemoglobin to treat β-hemoglobinopathies.
PMID: 35526095
Mol Ther · 2022
0.80
4
ZNF410 Uniquely Activates the NuRD Component CHD4 to Silence Fetal Hemoglobin Expression.
PMID: 33301730
Mol Cell · 2021
0.70
5
ZNF410 represses fetal globin by singular control of CHD4.
PMID: 33859416
Nat Genet · 2021
0.60