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6 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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ZNF569
zinc finger protein 569
Chromosome 19 · 19q13.12
NCBI Gene: 148266Ensembl: ENSG00000196437.12HGNC: HGNC:24737UniProt: K7ELU1
17PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingregulation of transcription by RNA polymerase IInucleusDNA-binding transcription factor activity, RNA polymerase II-specificliver diseaseneoplasmhead and neck squamous cell carcinomabreast cancer
✦AI Summary

ZNF569 is a zinc finger protein containing KRAB and zinc finger motifs that functions as a transcriptional repressor 1. The protein is expressed across most human adult and embryonic tissues, with elevated levels in heart and skeletal muscles 1. ZNF569 suppresses transcriptional activity through its repression domains and inhibits MAPK signaling pathway components including SRE and AP-1 1. Beyond its transcriptional regulatory role, ZNF569 has emerged as a clinically relevant biomarker. Its promoter methylation patterns distinguish Barrett's esophagus from normal squamous esophagus, with hypermethylation associated with premalignant disease 23. In esophageal cancer, ZNF569 methylation accurately detects malignancy prior to and following neoadjuvant chemoradiation, particularly in adenocarcinoma, with potential utility in liquid biopsies 4. ZNF569 methylation also functions as a biomarker for gastric adenocarcinoma detection in both tissue and plasma samples, where a three-marker panel including ZNF569 achieved 86% sensitivity at 95% specificity 5. Additionally, ZNF569 protein levels modulate cellular sensitivity to paclitaxel chemotherapy 6, suggesting roles in drug response mechanisms.

Sources cited
1
ZNF569 is a KRAB-containing zinc finger protein that acts as a transcriptional repressor and suppresses MAPK signaling pathway
PMID: 16793018
2
ZNF569 protein levels are functionally associated with cellular response to paclitaxel chemotherapy
PMID: 24699359
3
ZNF569 hypermethylation distinguishes Barrett's esophagus from normal squamous esophageal tissue
PMID: 29084829
4
ZNF569 promoter methylation correlates with intestinal metaplasia extent and can assess Barrett's esophagus response to radiofrequency ablation
PMID: 32707444
5
ZNF569 methylation accurately detects esophageal cancer pre- and post-chemoradiation, including in liquid biopsies
PMID: 36670548
6
ZNF569 methylation is part of a biomarker panel that detects gastric adenocarcinoma with 86% sensitivity at 95% specificity in plasma
PMID: 29844130
Disease Associationsⓘ20
liver diseaseOpen Targets
0.27Weak
neoplasmOpen Targets
0.10Suggestive
head and neck squamous cell carcinomaOpen Targets
0.09Suggestive
breast cancerOpen Targets
0.09Suggestive
cancerOpen Targets
0.09Suggestive
Alzheimer diseaseOpen Targets
0.07Suggestive
osteosarcomaOpen Targets
0.06Suggestive
Zinc deficiencyOpen Targets
0.05Suggestive
deafnessOpen Targets
0.05Suggestive
colorectal carcinomaOpen Targets
0.05Suggestive
autosomal recessive nonsyndromic hearing loss 9Open Targets
0.04Suggestive
autosomal dominant nonsyndromic hearing lossOpen Targets
0.04Suggestive
COVID-19Open Targets
0.04Suggestive
gastrointestinal stromal tumorOpen Targets
0.03Suggestive
hearing loss, autosomal recessiveOpen Targets
0.03Suggestive
infectionOpen Targets
0.03Suggestive
Parkinson diseaseOpen Targets
0.03Suggestive
lung cancerOpen Targets
0.03Suggestive
kidney cancerOpen Targets
0.02Suggestive
telomere syndromeOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
UBCProtein interaction100%TRIM28Protein interaction99%USP5Protein interaction82%USP44Protein interaction79%YOD1Protein interaction79%ZUP1Protein interaction78%
Tissue Expression6 tissues
Bone Marrow
100%
Heart
92%
Brain
78%
Ovary
60%
Liver
41%
Lung
30%
Gene Interaction Network
Click a node to explore
ZNF569UBCTRIM28USP5USP44YOD1ZUP1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q5MCW4
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.86LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.66 [0.51–0.86]
RankingsWhere ZNF569 stands among ~20K protein-coding genes
  • #15,185of 20,598
    Most Researched17
  • #7,604of 17,882
    Most Constrained (LOEUF)0.86
Genes detectedZNF569
Sources retrieved6 papers
Response time—
📄 Sources
6▼
1
Protein quantitative trait loci identify novel candidates modulating cellular response to chemotherapy.
PMID: 24699359
PLoS Genet · 2014
1.00
2
The utility of a methylation panel in the assessment of clinical response to radiofrequency ablation for Barrett's esophagus.
PMID: 32707444
EBioMedicine · 2020
0.83
3
DNA methylation biomarkers accurately detect esophageal cancer prior and post neoadjuvant chemoradiation.
PMID: 36670548
Cancer Med · 2023
0.67
4
Methylation panel is a diagnostic biomarker for Barrett's oesophagus in endoscopic biopsies and non-endoscopic cytology specimens.
PMID: 29084829
Gut · 2018
0.50
5
ZNF569, a novel KRAB-containing zinc finger protein, suppresses MAPK signaling pathway.
PMID: 16793018
Biochem Biophys Res Commun · 2006
0.33