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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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ZSWIM8
zinc finger SWIM-type containing 8
Chromosome 10 · 10q22.2
NCBI Gene: 23053Ensembl: ENSG00000214655.11HGNC: HGNC:23528UniProt: A7E2V4
49PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly Constrained
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
Cul3-RING ubiquitin ligase complexubiquitin-like ligase-substrate adaptor activityprotein quality control for misfolded or incompletely synthesized proteinsprotein ubiquitinationaortic stenosisatrial fibrillationsmoking cessationasthma
✦AI Summary

ZSWIM8 (zinc finger SWIM-type containing 8) functions as a substrate adaptor protein for Cullin3-RING E3 ubiquitin ligase complexes, serving dual roles in microRNA regulation and viral immune evasion. Its primary function involves mediating target-directed microRNA degradation (TDMD), where ZSWIM8 recognizes Argonaute-miRNA complexes engaged with highly complementary trigger RNAs and facilitates AGO protein ubiquitination and proteasomal degradation, ultimately leading to miRNA decay 12. Mechanistically, cryo-EM studies reveal that ZSWIM8 specifically binds distinct AGO2 conformations shaped by miRNA-trigger RNA pairing, establishing a two-RNA-factor authentication mechanism for substrate recognition 3. This mechanism is evolutionarily conserved across mammals, flies, and nematodes, where ZSWIM8 regulates the half-lives of most short-lived miRNAs 14. In viral infections, ZSWIM8 plays a critical role in immune evasion when Zika virus NS5 protein acts as a scaffold to reprogram the ZSWIM8-CUL3 complex, targeting STAT2 for degradation and inhibiting type I interferon signaling 5. ZSWIM8 knockout confers partial resistance to ZIKV infection by maintaining STAT2 levels and preserving interferon responses 5. Additionally, ZSWIM8 participates in myogenesis regulation, partially preventing C2C12 muscle cell differentiation 6.

Sources cited
1
ZSWIM8 mediates target-directed miRNA degradation through Cullin-RING E3 ubiquitin ligase activity and regulates miRNA half-lives across species
PMID: 33184237
2
ZSWIM8 CRL interacts with AGO proteins and promotes TDMD independently of tailing and trimming mechanisms
PMID: 33184234
3
Cryo-EM analysis shows ZSWIM8 recognizes specific AGO2-miRNA-trigger conformations through a two-RNA-factor authentication mechanism
PMID: 41542392
4
Zika virus NS5 reprograms ZSWIM8-CUL3 complex to degrade STAT2 and inhibit interferon signaling; ZSWIM8 knockout confers partial ZIKV resistance
PMID: 39145933
5
ZSWIM8 is induced during C2C12 differentiation and partially prevents muscle cell differentiation
PMID: 34686700
6
TDMD mechanism mediated by ZSWIM8 ortholog is conserved in Drosophila and affects Notch signaling pathway
PMID: 40328417
Disease Associationsⓘ20
aortic stenosisOpen Targets
0.28Weak
atrial fibrillationOpen Targets
0.21Weak
smoking cessationOpen Targets
0.09Suggestive
asthmaOpen Targets
0.07Suggestive
Zika virus infectious diseaseOpen Targets
0.07Suggestive
congestive heart failureOpen Targets
0.07Suggestive
heart failureOpen Targets
0.05Suggestive
hypertrophic cardiomyopathyOpen Targets
0.05Suggestive
Congenital pulmonary alveolar proteinosisOpen Targets
0.05Suggestive
Neonatal acute respiratory distress with surfactant metabolism deficiencyOpen Targets
0.05Suggestive
cardioembolic strokeOpen Targets
0.05Suggestive
atrial flutterOpen Targets
0.04Suggestive
cardiomyopathy, dilated, 2HOpen Targets
0.04Suggestive
spinal muscular atrophy, type 1Open Targets
0.04Suggestive
primary ciliary dyskinesiaOpen Targets
0.04Suggestive
tricuspid atresiaOpen Targets
0.04Suggestive
Lung agenesis - heart defect - thumb anomaliesOpen Targets
0.04Suggestive
lung agenesis-heart defect-thumb anomalies syndromeOpen Targets
0.04Suggestive
systolic heart failureOpen Targets
0.04Suggestive
nonischemic cardiomyopathyOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CUL3Protein interaction100%ELOCProtein interaction100%ELOBProtein interaction100%RBX1Protein interaction99%KLHL22Protein interaction93%KLHL42Protein interaction92%
Tissue Expression6 tissues
Liver
100%
Bone Marrow
85%
Lung
83%
Ovary
77%
Heart
43%
Brain
30%
Gene Interaction Network
Click a node to explore
ZSWIM8CUL3ELOCELOBRBX1KLHL22KLHL42
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt A7E2V4
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.23Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.17 [0.12–0.23]
RankingsWhere ZSWIM8 stands among ~20K protein-coding genes
  • #9,036of 20,598
    Most Researched49
  • #627of 17,882
    Most Constrained (LOEUF)0.23 · top 5%
Genes detectedZSWIM8
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
The ZSWIM8 ubiquitin ligase mediates target-directed microRNA degradation.
PMID: 33184237
Science · 2020
1.00
2
Zika virus NS5 protein inhibits type I interferon signaling via CRL3 E3 ubiquitin ligase-mediated degradation of STAT2.
PMID: 39145933
Proc Natl Acad Sci U S A · 2024
0.90
3
A ubiquitin ligase mediates target-directed microRNA decay independently of tailing and trimming.
PMID: 33184234
Science · 2020
0.80
4
The E3 ubiquitin ligase mechanism specifying target-directed microRNA degradation.
PMID: 41542392
bioRxiv · 2026
0.70
5
ZSWIM8 is a myogenic protein that partly prevents C2C12 differentiation.
PMID: 34686700
Sci Rep · 2021
0.60