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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
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ABCD4
ATP binding cassette subfamily D member 4
Chromosome 14 Β· 14q24.3
NCBI Gene: 5826Ensembl: ENSG00000119688.22HGNC: HGNC:68UniProt: O14678
38PubMed Papers
21Diseases
0Drugs
42Pathogenic Variants
FUNCTIONAL ROLE
Transporter
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
peroxisomeprotein bindingABC-type vitamin B12 transporter activityidentical protein bindingmethylmalonic acidemia with homocystinuria, type cblJMethylmalonic acidemia with homocystinuriamethylmalonic aciduria and homocystinuria type cblCMethylmalonic acidemia with homocystinuria, type cblC
✦AI Summary

ABCD4 is a lysosomal ATP-binding cassette transporter essential for cobalamin (vitamin B12) homeostasis 1. This protein functions as an ATP-dependent transporter that mediates cobalamin export from the lysosomal lumen to the cytosol 2, a process mechanistically dependent on its ATPase activity 2. ABCD4 localizes to lysosomal membranes through recruitment by the chaperone protein LMBRD1 from the endoplasmic reticulum 3. At the lysosomal membrane, ABCD4 forms a functional complex with LMBRD1 and the cytosolic protein MMACHC, which facilitates vectorial cobalamin delivery to prevent cofactor dilution and protect against inactivating reactions 4. Clinically, ABCD4 mutations cause methylmalonic aciduria and homocystinuria type cblJ (cblJ deficiency), a cobalamin metabolism disorder characterized by impaired cobalamin cofactor synthesis 3. Patients present with metabolic dysfunction affecting methionine synthase and methylmalonyl-CoA mutase, the two human cobalamin-dependent enzymes 5. Disease-causing mutations disrupt either the ATPase domain or clinical domain of ABCD4, impairing its interaction with LMBRD1 and subsequent lysosomal targeting 3. Animal models demonstrate that ABCD4 loss results in vitamin B12 deficiency-associated anemia with abnormal red blood cell development 6.

Sources cited
1
ABCD4 is localized to lysosomes and functions in transport of vitamin B12 from lysosomes into the cytosol
PMID: 27766264
2
ABCD4 transports cobalamin from the lysosomal lumen to the cytosol dependent on its ATPase activity
PMID: 33845046
3
ABCD4 requires interaction with LMBRD1 for lysosomal targeting and cobalamin cofactor synthesis; mutations in ABCD4 cause cblJ deficiency
PMID: 28572511
4
ABCD4 forms a complex with lysosomal chaperone LMBRD1 and cytosolic MMACHC to facilitate vectorial delivery of lysosomal cobalamin to cytoplasmic MMACHC
PMID: 25535791
5
ABCD4 structure and mechanism recently elucidated; involved in cobalamin transport across the lysosomal membrane for cofactor generation
PMID: 36680553
6
Loss of abcd4 in zebrafish leads to vitamin B12 deficiency-associated anemia with abnormal red blood cell development
PMID: 31113616
Disease Associationsβ“˜21
methylmalonic acidemia with homocystinuria, type cblJOpen Targets
0.81Strong
Methylmalonic acidemia with homocystinuriaOpen Targets
0.76Strong
Methylmalonic acidemia with homocystinuria, type cblCOpen Targets
0.51Moderate
methylmalonic aciduria and homocystinuria type cblCOpen Targets
0.51Moderate
vitamin B deficiencyOpen Targets
0.38Weak
homocystinuriaOpen Targets
0.37Weak
Vitamin B12-responsive methylmalonic acidemia type cblBOpen Targets
0.37Weak
alcohol drinkingOpen Targets
0.25Weak
genetic disorderOpen Targets
0.19Weak
atrial fibrillationOpen Targets
0.06Suggestive
X-linked adrenoleukodystrophyOpen Targets
0.05Suggestive
adrenoleukodystrophyOpen Targets
0.04Suggestive
breast cancerOpen Targets
0.02Suggestive
anemiaOpen Targets
0.02Suggestive
non-small cell lung carcinomaOpen Targets
0.01Suggestive
vitamin B12 deficiencyOpen Targets
0.01Suggestive
systemic juvenile idiopathic arthritisOpen Targets
0.01Suggestive
hyperinsulinemic hypoglycemia, familial, 4Open Targets
0.01Suggestive
glioblastoma multiformeOpen Targets
0.01Suggestive
Alzheimer diseaseOpen Targets
0.01Suggestive
Methylmalonic aciduria and homocystinuria type cblJUniProt
Pathogenic Variants42
NM_005050.4(ABCD4):c.542+1G>TPathogenic
Methylmalonic acidemia with homocystinuria, type cblJ|not provided
β˜…β˜…β˜†β˜†2025
NM_005050.4(ABCD4):c.528C>A (p.Tyr176Ter)Pathogenic
Methylmalonic acidemia with homocystinuria, type cblJ
β˜…β˜…β˜†β˜†2025β†’ Residue 176
NM_005050.4(ABCD4):c.423C>G (p.Asn141Lys)Pathogenic
Cobalamin C disease|Methylmalonic acidemia with homocystinuria, type cblJ|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 141
NM_005050.4(ABCD4):c.1588C>T (p.Gln530Ter)Pathogenic
Methylmalonic acidemia with homocystinuria, type cblJ|Cobalamin C disease|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 530
NM_005050.4(ABCD4):c.1295G>A (p.Arg432Gln)Likely pathogenic
Cobalamin C disease|Methylmalonic acidemia with homocystinuria, type cblJ
β˜…β˜…β˜†β˜†2024β†’ Residue 432
NM_005050.4(ABCD4):c.1125del (p.Trp377fs)Pathogenic
Methylmalonic acidemia with homocystinuria, type cblJ|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 377
NM_005050.4(ABCD4):c.1246_1247del (p.Ser416fs)Pathogenic
Methylmalonic acidemia with homocystinuria, type cblJ
β˜…β˜†β˜†β˜†2025β†’ Residue 416
NM_005050.4(ABCD4):c.1346del (p.Thr449fs)Pathogenic
Methylmalonic acidemia with homocystinuria, type cblJ
β˜…β˜†β˜†β˜†2025β†’ Residue 449
NM_005050.4(ABCD4):c.131del (p.Leu44fs)Pathogenic
Methylmalonic acidemia with homocystinuria, type cblJ
β˜…β˜†β˜†β˜†2025β†’ Residue 44
NM_005050.4(ABCD4):c.529C>T (p.Gln177Ter)Pathogenic
Cobalamin C disease
β˜…β˜†β˜†β˜†2025β†’ Residue 177
NM_005050.4(ABCD4):c.552_564del (p.Gly183_Trp184insTer)Pathogenic
Cobalamin C disease
β˜…β˜†β˜†β˜†2025β†’ Residue 183
NM_005050.4(ABCD4):c.643del (p.Gln215fs)Pathogenic
Methylmalonic acidemia with homocystinuria, type cblJ
β˜…β˜†β˜†β˜†2025β†’ Residue 215
NM_005050.4(ABCD4):c.442C>T (p.Gln148Ter)Pathogenic
Methylmalonic acidemia with homocystinuria, type cblJ
β˜…β˜†β˜†β˜†2025β†’ Residue 148
NM_005050.4(ABCD4):c.1118+2T>ALikely pathogenic
Methylmalonic acidemia with homocystinuria, type cblJ
β˜…β˜†β˜†β˜†2024
NM_005050.4(ABCD4):c.565_566del (p.Ser189fs)Likely pathogenic
Methylmalonic acidemia with homocystinuria, type cblJ
β˜…β˜†β˜†β˜†2024β†’ Residue 189
NM_005050.4(ABCD4):c.936+1G>ALikely pathogenic
Methylmalonic acidemia with homocystinuria, type cblJ
β˜…β˜†β˜†β˜†2024
NM_005050.4(ABCD4):c.669-1G>ALikely pathogenic
Methylmalonic acidemia with homocystinuria, type cblJ
β˜…β˜†β˜†β˜†2024
NM_005050.4(ABCD4):c.426-1G>ALikely pathogenic
Methylmalonic acidemia with homocystinuria, type cblJ
β˜…β˜†β˜†β˜†2024
NM_005050.4(ABCD4):c.1118+1G>TLikely pathogenic
Methylmalonic acidemia with homocystinuria, type cblJ
β˜…β˜†β˜†β˜†2024
NM_005050.4(ABCD4):c.1237G>T (p.Glu413Ter)Likely pathogenic
Methylmalonic acidemia with homocystinuria, type cblJ
β˜…β˜†β˜†β˜†2024β†’ Residue 413
View on ClinVar β†—
Related Genes
SLC27A2Protein interaction88%SLC9A1Protein interaction85%RAD51Protein interaction85%ACSBG1Protein interaction83%LMBRD1Protein interaction76%ABCB8Protein interaction76%
Tissue Expression6 tissues
Ovary
100%
Liver
84%
Lung
56%
Bone Marrow
53%
Heart
49%
Brain
24%
Gene Interaction Network
Click a node to explore
ABCD4SLC27A2SLC9A1RAD51ACSBG1LMBRD1ABCB8
PROTEIN STRUCTURE
Preparing viewer…
PDB6JBJ Β· 3.60 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.77LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.61 [0.49–0.77]
RankingsWhere ABCD4 stands among ~20K protein-coding genes
  • #10,427of 20,598
    Most Researched38
  • #1,497of 5,498
    Most Pathogenic Variants42
  • #6,266of 17,882
    Most Constrained (LOEUF)0.77
Genes detectedABCD4
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
ABC Transporter Subfamily D: Distinct Differences in Behavior between ABCD1-3 and ABCD4 in Subcellular Localization, Function, and Human Disease.
PMID: 27766264
Biomed Res Int Β· 2016
1.00
2
Substrate Specificity and the Direction of Transport in the ABC Transporters ABCD1-3 and ABCD4.
PMID: 35908918
Chem Pharm Bull (Tokyo) Β· 2022
0.90
3
The complex machinery of human cobalamin metabolism.
PMID: 36680553
J Inherit Metab Dis Β· 2023
0.80
4
Purification and interaction analyses of two human lysosomal vitamin B12 transporters: LMBD1 and ABCD4.
PMID: 25535791
Mol Membr Biol Β· 2014
0.70
5
PMID: 20301503
0.60