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GeneE
25 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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ACAN
aggrecan
Chromosome 15 Β· 15q26.1
NCBI Gene: 176Ensembl: ENSG00000157766.19HGNC: HGNC:319UniProt: A0A5K1VW97
177PubMed Papers
23Diseases
0Drugs
203Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
RESEARCH IMPACT
TrendingVariant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingextracellular matrixsynapseextracellular matrix structural constituent conferring compression resistanceFamilial osteochondritis dissecansspondyloepimetaphyseal dysplasia, aggrecan typespondyloepiphyseal dysplasia, Kimberley typeosteochondritis dissecans
✦AI Summary

ACAN encodes aggrecan, a major extracellular matrix proteoglycan that functions primarily to resist compression in cartilage by binding avidly to hyaluronic acid via its N-terminal globular domain 1. Beyond skeletal tissues, ACAN is produced by notochordal cells, chondrocytes, and other matrix-producing cell types 1, and its expression is regulated by SOX9-mediated transactivation, with acetylation of SOX9 inhibiting ACAN gene expression and nuclear localization 2. Clinical significance of ACAN dysfunction is substantial. Heterozygous ACAN variants cause a spectrum of phenotypes including short stature (average -3.30 SD), early-onset osteoarthritis, brachydactyly, and midfacial hypoplasia, with 314 reported individuals from 105 families harboring such variants 3. Children with ACAN mutations born small for gestational age frequently show advanced bone age maturation 4. Recombinant human growth hormone (rhGH) treatment, often combined with GnRHa, produces significant height improvement in affected pediatric patients 3. ACAN expression decreases progressively during osteoarthritis development, correlating with disease severity 5. Additionally, ACAN gene polymorphisms have been associated with Alzheimer's disease risk 6. YAP/TAZ-mediated regulation of ACAN also contributes to vascular homeostasis, with dysregulation associated with aneurysm development 7.

Sources cited
1
ACAN produces abundant proteoglycan crucial for extracellular matrix; expressed in notochordal cells, chondrocytes, and other diverse tissue types
PMID: 39441923
2
SOX9 acetylation reduces ACAN transactivation; SOX9 deacetylation promotes nuclear translocation and ACAN expression in chondrocytes
PMID: 26910618
3
314 individuals from 105 families with ACAN heterozygous variants show phenotypes including short stature, osteoarthritis, brachydactyly, midfacial hypoplasia; rhGH/GnRHa treatment improves adult height
PMID: 38613222
4
ACAN mutations in SGA children associate with advanced bone age, midface hypoplasia, joint problems, broad great toes; GH plus GnRHa treatment beneficial
PMID: 27710243
5
ACAN expression decreases progressively during osteoarthritis progression; SOX9 and ACAN mRNA decline correlates with cartilage degeneration
PMID: 27428952
6
ACAN gene VNTR polymorphism associated with Alzheimer's disease; shorter alleles increase disease risk
PMID: 38340307
7
YAP/TAZ deletion increases SOX9 and ACAN expression in vascular smooth muscle, contributing to aneurysm development
PMID: 37561588
8
Chinese ACAN-deficient children show early growth cessation; growth velocity improves significantly with growth-promoting treatment
PMID: 36387899
Disease Associationsβ“˜23
Familial osteochondritis dissecansOpen Targets
0.76Strong
spondyloepimetaphyseal dysplasia, aggrecan typeOpen Targets
0.75Strong
spondyloepiphyseal dysplasia, Kimberley typeOpen Targets
0.73Strong
osteochondritis dissecansOpen Targets
0.73Strong
genetic disorderOpen Targets
0.54Moderate
Dupuytren ContractureOpen Targets
0.52Moderate
Abnormality of the skeletal systemOpen Targets
0.51Moderate
hearing lossOpen Targets
0.51Moderate
spondyloepiphyseal dysplasiaOpen Targets
0.50Moderate
osteoarthritisOpen Targets
0.49Moderate
osteoarthritis, kneeOpen Targets
0.49Moderate
age-related hearing impairmentOpen Targets
0.48Moderate
Sensorineural hearing impairmentOpen Targets
0.48Moderate
short stature-advanced bone age-early-onset osteoarthritis syndromeOpen Targets
0.45Moderate
osteoarthritis, hipOpen Targets
0.43Moderate
Palmar FibromatosisOpen Targets
0.40Weak
ACAN-related short stature spectrumOpen Targets
0.37Weak
musculoskeletal system diseaseOpen Targets
0.35Weak
TinnitusOpen Targets
0.34Weak
ArthropathyOpen Targets
0.34Weak
Short stature and advanced bone age, with or without early-onset osteoarthritis and/or osteochondritis dissecansUniProt
Spondyloepimetaphyseal dysplasia, aggrecan typeUniProt
Spondyloepiphyseal dysplasia type KimberleyUniProt
Pathogenic Variants203
NM_001369268.1(ACAN):c.7302+1G>APathogenic
Short stature and advanced bone age, with or without early-onset osteoarthritis and/or osteochondritis dissecans|ACAN-related short stature spectrum
β˜…β˜…β˜†β˜†2026
NM_001369268.1(ACAN):c.7255G>A (p.Asp2419Asn)Likely pathogenic
Spondyloepimetaphyseal dysplasia, aggrecan type|Short stature and advanced bone age, with or without early-onset osteoarthritis and/or osteochondritis dissecans|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 2419
NM_001369268.1(ACAN):c.867del (p.Trp290fs)Pathogenic
not provided|Short stature and advanced bone age, with or without early-onset osteoarthritis and/or osteochondritis dissecans
β˜…β˜…β˜†β˜†2025β†’ Residue 290
NM_001369268.1(ACAN):c.6912C>A (p.Cys2304Ter)Pathogenic
not provided|ACAN-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 2304
NM_001369268.1(ACAN):c.760G>T (p.Glu254Ter)Pathogenic
not provided|Short stature and advanced bone age, with or without early-onset osteoarthritis and/or osteochondritis dissecans
β˜…β˜…β˜†β˜†2025β†’ Residue 254
NM_001369268.1(ACAN):c.492C>A (p.Tyr164Ter)Pathogenic
not provided|Osteochondritis dissecans|Spondyloepiphyseal dysplasia, Kimberley type;Short stature and advanced bone age, with or without early-onset osteoarthritis and/or osteochondritis dissecans;Spondyloepimetaphyseal dysplasia, aggrecan type
β˜…β˜…β˜†β˜†2025β†’ Residue 164
NM_001369268.1(ACAN):c.1551C>G (p.Tyr517Ter)Pathogenic
not provided|Short stature and advanced bone age, with or without early-onset osteoarthritis and/or osteochondritis dissecans
β˜…β˜…β˜†β˜†2025β†’ Residue 517
NM_001369268.1(ACAN):c.630-13G>APathogenic
not provided
β˜…β˜…β˜†β˜†2025
NM_001369268.1(ACAN):c.776_777del (p.Thr259fs)Pathogenic
not provided|See cases
β˜…β˜…β˜†β˜†2025β†’ Residue 259
NM_001369268.1(ACAN):c.1180C>T (p.Arg394Ter)Pathogenic
ACAN-related disorder|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 394
NM_001369268.1(ACAN):c.1156C>T (p.Arg386Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 386
NM_001369268.1(ACAN):c.1526_1529del (p.Ser509fs)Pathogenic
not provided|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 509
NM_001369268.1(ACAN):c.706C>T (p.Arg236Ter)Pathogenic
not provided|Short stature and advanced bone age, with or without early-onset osteoarthritis and/or osteochondritis dissecans
β˜…β˜…β˜†β˜†2025β†’ Residue 236
NM_001369268.1(ACAN):c.1975C>T (p.Gln659Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 659
NM_001369268.1(ACAN):c.17G>A (p.Trp6Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 6
NM_001369268.1(ACAN):c.1130G>A (p.Trp377Ter)Pathogenic
not provided|Short stature and advanced bone age, with or without early-onset osteoarthritis and/or osteochondritis dissecans
β˜…β˜…β˜†β˜†2024β†’ Residue 377
NM_001369268.1(ACAN):c.2023C>T (p.Arg675Ter)Pathogenic
not provided|Short stature and advanced bone age, with or without early-onset osteoarthritis and/or osteochondritis dissecans|Short stature and advanced bone age, with or without early-onset osteoarthritis and/or osteochondritis dissecans;Spondyloepiphyseal dysplasia, Kimberley type;Spondyloepimetaphyseal dysplasia, aggrecan type
β˜…β˜…β˜†β˜†2024β†’ Residue 675
NM_001369268.1(ACAN):c.1172del (p.Gly391fs)Pathogenic
not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 391
NM_001369268.1(ACAN):c.1097dup (p.Gly366_Glu367insTer)Pathogenic
not provided|Spondyloepiphyseal dysplasia, Kimberley type;Short stature and advanced bone age, with or without early-onset osteoarthritis and/or osteochondritis dissecans;Spondyloepimetaphyseal dysplasia, aggrecan type
β˜…β˜…β˜†β˜†2024β†’ Residue 366
NM_001369268.1(ACAN):c.1227del (p.Ser410fs)Pathogenic
Inborn genetic diseases|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 410
View on ClinVar β†—
Related Genes
TGFB1Protein interaction100%HLA-DRAProtein interaction100%FN1Protein interaction100%ELNProtein interaction99%BGNProtein interaction99%HSPG2Protein interaction99%
Tissue Expression6 tissues
Brain
100%
Lung
90%
Ovary
72%
Heart
51%
Bone Marrow
17%
Liver
15%
Gene Interaction Network
Click a node to explore
ACANTGFB1HLA-DRAFN1ELNBGNHSPG2
PROTEIN STRUCTURE
Preparing viewer…
PDB4MD4 Β· 1.95 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.38Moderately Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.30 [0.23–0.38]
RankingsWhere ACAN stands among ~20K protein-coding genes
  • #2,453of 20,598
    Most Researched177 Β· top quartile
  • #331of 5,498
    Most Pathogenic Variants203 Β· top 10%
  • #1,797of 17,882
    Most Constrained (LOEUF)0.38 Β· top quartile
Genes detectedACAN
Sources retrieved25 papers
Response timeβ€”
πŸ“„ Sources
25β–Ό
1
Genotype and phenotype in patients with ACAN gene variants: Three cases and literature review.
PMID: 38613222
Mol Genet Genomic Med Β· 2024
1.00
2
Isolation and tracing of matrix-producing notochordal and chondrocyte cells using ACAN-2A-mScarlet reporter human iPSC lines.
PMID: 39441923
Sci Adv Β· 2024
0.90
3
Vascular smooth muscle-specific YAP/TAZ deletion triggers aneurysm development in mouse aorta.
PMID: 37561588
JCI Insight Β· 2023
0.80
4
ACAN Gene Mutations in Short Children Born SGA and Response to Growth Hormone Treatment.
PMID: 27710243
J Clin Endocrinol Metab Β· 2017
0.70
5
Aggrecan and versican: two brothers close or apart.
PMID: 35385326
Am J Physiol Cell Physiol Β· 2022
0.68