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25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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ACLY
ATP citrate lyase
Chromosome 17 · 17q21.2
NCBI Gene: 47Ensembl: ENSG00000131473.18HGNC: HGNC:115UniProt: P53396
295PubMed Papers
20Diseases
1Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
RESEARCH IMPACT
Trending
CLINICAL
FDA Approved Target
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
cytosolmembraneprotein bindinglipid biosynthetic processHypercholesterolemiafamilial hypercholesterolemiacardiovascular diseaseatherosclerosis
✦AI Summary

ACLY (ATP citrate lyase) catalyzes the cleavage of citrate into oxaloacetate and acetyl-CoA, serving as a critical hub linking nutrient metabolism to biosynthetic and epigenetic processes 1. The enzyme operates at the intersection of mitochondrial metabolism and cytosolic lipogenesis, controlling fatty acid and cholesterol synthesis while generating acetyl-CoA for histone acetylation 23. Beyond canonical metabolic functions, ACLY-derived acetyl-CoA acts as a signaling metabolite regulating mitophagy through direct binding to NLRX1 4 and modulates ferroptosis susceptibility via FSP1 acetylation 5. ACLY dysregulation contributes to multiple diseases. In hepatocellular carcinoma (HCC), ACLY inhibition reduces tumor burden over 70% by reprogramming tumor immunity, increasing chemokine CXCL13, tumor-infiltrating B cells, and tertiary lymphoid structures 1. In neuroinflammation, ACLY-p300 interactions control epigenetic memory in disease-associated astrocytes, promoting CNS pathology in experimental autoimmune encephalomyelitis and multiple sclerosis 6. ACLY also regulates exhausted CD8+ T cell differentiation through citrate-dependent histone acetylation at TEX signature genes 7. Clinically, ACLY represents a promising therapeutic target. The selective inhibitor EVT0185 demonstrates efficacy in MASH-HCC as monotherapy and synergizes with tyrosine kinase inhibitors and immunotherapies 1. ACLY inhibition combined with immune checkpoint inhibitors or ferroptosis inducers offers potential multi-modal treatment strategies across cancer types.

Sources cited
1
ACLY links substrate availability with lipid biosynthesis and gene regulation; ACLY inhibition reduces HCC tumor burden via immune remodeling; EVT0185 inhibitor mechanism and clinical efficacy
PMID: 40739358
2
IKKβ-USP30-ACLY axis controls lipogenesis and tumorigenesis in HCC; ACLY inhibitor combined with anti-PD-L1 suppresses hepatocarcinogenesis
PMID: 32221968
3
ACLY expression is regulated by PPARγ stabilization; ACLY promotes de novo fatty acid synthesis in HCC tumorigenesis
PMID: 35449157
4
ACLY-p300 interactions control epigenetic memory in disease-associated astrocytes; ACLY inactivation ameliorates EAE and is elevated in chronic multiple sclerosis lesions
PMID: 38509377
5
TEX cells maintain ACLY activity while downregulating ACSS2; ACLY-KAT2A interactions mediate citrate-dependent histone acetylation at TEX genes; ACLY inhibition prevents TEX differentiation
PMID: 39666821
6
Cytosolic acetyl-CoA from ACLY acts as a signaling metabolite binding to NLRX1 to control mitophagy; ACLY inhibition triggers mitophagy via AcCoA reduction
PMID: 41225001
7
SLC25A1-ACLY axis maintains cytosolic acetyl-CoA for FSP1 acetylation; ACLY and SLC25A1 inhibition enhances ferroptosis susceptibility in cancer cells
PMID: 39881208
Disease Associationsⓘ20
HypercholesterolemiaOpen Targets
0.54Moderate
familial hypercholesterolemiaOpen Targets
0.53Moderate
cardiovascular diseaseOpen Targets
0.51Moderate
atherosclerosisOpen Targets
0.50Moderate
inherited lipid metabolism disorderOpen Targets
0.38Weak
coronary artery diseaseOpen Targets
0.37Weak
Abnormal circulating lipid concentrationOpen Targets
0.37Weak
hyperlipidemiaOpen Targets
0.28Weak
hepatocellular carcinomaOpen Targets
0.11Weak
neoplasmOpen Targets
0.11Weak
cancerOpen Targets
0.11Weak
esophageal squamous cell carcinomaOpen Targets
0.09Suggestive
acute lymphoblastic leukemiaOpen Targets
0.09Suggestive
colorectal carcinomaOpen Targets
0.09Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.09Suggestive
acute myeloid leukemiaOpen Targets
0.09Suggestive
Autosomal dominant polycystic kidney diseaseOpen Targets
0.08Suggestive
lung cancerOpen Targets
0.08Suggestive
melanomaOpen Targets
0.08Suggestive
biliary tract diseaseOpen Targets
0.08Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Drug Targets1
BEMPEDOIC ACIDApproved
ATP-citrate synthase inhibitor
familial hypercholesterolemia
Related Genes
IDH2Protein interaction100%IDH1Protein interaction100%HMGCS1Protein interaction100%HMGCS2Protein interaction100%ACO2Protein interaction99%SDHAProtein interaction98%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
58%
Lung
54%
Heart
42%
Liver
34%
Ovary
32%
Gene Interaction Network
Click a node to explore
ACLYIDH2IDH1HMGCS1HMGCS2ACO2SDHA
PROTEIN STRUCTURE
Preparing viewer…
PDB6HXM · 1.30 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.40Moderately Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.31 [0.24–0.40]
RankingsWhere ACLY stands among ~20K protein-coding genes
  • #1,196of 20,598
    Most Researched295 · top 10%
  • #797of 1,025
    FDA-Approved Drug Targets1
  • #2,013of 17,882
    Most Constrained (LOEUF)0.40 · top quartile
Genes detectedACLY
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
Metabolic dysregulation and emerging therapeutical targets for hepatocellular carcinoma.
PMID: 35256934
Acta Pharm Sin B · 2022
1.00
2
Nutrient-driven histone code determines exhausted CD8
PMID: 39666821
Science · 2025
0.90
3
The glucose transporter GLUT3 controls T helper 17 cell responses through glycolytic-epigenetic reprogramming.
PMID: 35316657
Cell Metab · 2022
0.88
4
ACLY inhibition promotes tumour immunity and suppresses liver cancer.
PMID: 40739358
Nature · 2025
0.80
5
Disease-associated astrocyte epigenetic memory promotes CNS pathology.
PMID: 38509377
Nature · 2024
0.70