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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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ACSS2
acyl-CoA synthetase short chain family member 2
Chromosome 20 · 20q11.22
NCBI Gene: 55902Ensembl: ENSG00000131069.21HGNC: HGNC:15814UniProt: Q4G0E8
56PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
acetyl-CoA synthetase activitynucleoplasmprotein bindinglipid biosynthetic processneurodegenerative diseaseorofacial cleftneuroinflammatory disorderangina pectoris
✦AI Summary

ACSS2 (acyl-CoA synthetase short chain family member 2) is a metabolic enzyme that catalyzes the synthesis of acetyl-CoA from acetate and other short-chain fatty acids, playing critical roles in cellular metabolism, gene regulation, and disease pathogenesis 1. Under glucose deprivation, AMPK phosphorylates ACSS2 at S659, promoting its nuclear translocation where it binds transcription factor EB (TFEB) and locally produces acetyl-CoA for histone acetylation at promoters of lysosomal and autophagy genes, supporting tumor cell survival and brain tumorigenesis 1. ACSS2 also functions as a lactyl-CoA synthetase, converting lactate to lactyl-CoA and coupling with KAT2A to promote histone lactylation, leading to expression of oncogenic pathways including Wnt/β-catenin, NF-κB, and PD-L1 for tumor immune evasion 2. In kidney disease, ACSS2 controls de novo lipogenesis in tubular cells, causing NADPH depletion and oxidative stress that triggers NLRP3-dependent pyroptosis and kidney fibrosis 3. Additionally, ACSS2 mediates histone crotonylation to regulate IL-1β expression, promoting macrophage activation and tubular cell senescence in kidney fibrosis 4. The enzyme serves as a metabolic signaling hub connecting nutrient availability to epigenetic regulation and cellular fate decisions across multiple disease contexts.

Sources cited
1
ACSS2 undergoes AMPK-mediated phosphorylation and nuclear translocation under glucose deprivation to promote histone acetylation at lysosomal and autophagy gene promoters
PMID: 28552616
2
ACSS2 functions as a lactyl-CoA synthetase and couples with KAT2A for histone lactylation to promote tumor immune evasion
PMID: 39561764
3
ACSS2 controls de novo lipogenesis in kidney tubules, causing oxidative stress and NLRP3-dependent pyroptosis leading to kidney fibrosis
PMID: 38051585
4
ACSS2 mediates histone crotonylation to regulate IL-1β expression, promoting macrophage activation and tubular cell senescence in kidney fibrosis
PMID: 38615014
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.37Weak
orofacial cleftOpen Targets
0.33Weak
neuroinflammatory disorderOpen Targets
0.26Weak
angina pectorisOpen Targets
0.17Weak
neoplasmOpen Targets
0.11Weak
spinal stenosisOpen Targets
0.11Weak
coronary artery diseaseOpen Targets
0.10Weak
coronary atherosclerosisOpen Targets
0.09Suggestive
breast cancerOpen Targets
0.09Suggestive
kidney failureOpen Targets
0.09Suggestive
ovarian cancerOpen Targets
0.08Suggestive
myocardial infarctionOpen Targets
0.08Suggestive
renal fibrosisOpen Targets
0.08Suggestive
Alzheimer diseaseOpen Targets
0.08Suggestive
non-small cell lung carcinomaOpen Targets
0.08Suggestive
melanomaOpen Targets
0.08Suggestive
head and neck squamous cell carcinomaOpen Targets
0.07Suggestive
liver cancerOpen Targets
0.07Suggestive
cardiovascular diseaseOpen Targets
0.07Suggestive
kidney diseaseOpen Targets
0.07Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ACACAProtein interaction97%ACOT12Protein interaction96%ALDH3B1Protein interaction95%ALDH3B2Protein interaction95%ALDH3A1Protein interaction94%ACAA1Protein interaction91%
Tissue Expression6 tissues
Heart
100%
Liver
98%
Lung
82%
Ovary
34%
Brain
30%
Bone Marrow
13%
Gene Interaction Network
Click a node to explore
ACSS2ACACAACOT12ALDH3B1ALDH3B2ALDH3A1ACAA1
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q4G0E8
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.79LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.62 [0.49–0.79]
RankingsWhere ACSS2 stands among ~20K protein-coding genes
  • #8,036of 20,598
    Most Researched56
  • #6,447of 17,882
    Most Constrained (LOEUF)0.79
Genes detectedACSS2
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
ACSS2 acts as a lactyl-CoA synthetase and couples KAT2A to function as a lactyltransferase for histone lactylation and tumor immune evasion.
PMID: 39561764
Cell Metab · 2025
1.00
2
Nucleus-Translocated ACSS2 Promotes Gene Transcription for Lysosomal Biogenesis and Autophagy.
PMID: 28552616
Mol Cell · 2017
0.90
3
Acetylation in the regulation of autophagy.
PMID: 35435793
Autophagy · 2023
0.80
4
Acetate controls endothelial-to-mesenchymal transition.
PMID: 37327791
Cell Metab · 2023
0.70
5
Nutrient-driven histone code determines exhausted CD8
PMID: 39666821
Science · 2025
0.60