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GeneE
4 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
AGBL3
AGBL carboxypeptidase 3
Chromosome 7 Β· 7q33
NCBI Gene: 340351Ensembl: ENSG00000146856.14HGNC: HGNC:27981UniProt: Q8NEM8
14PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Protease
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
metallocarboxypeptidase activitytubulin bindingcytoplasmcentrioleglaucomaovarian dysfunctionstomach diseaseovarian neoplasm
✦AI Summary

AGBL3 is a metallocarboxypeptidase that mediates tubulin deglutamylation, functioning in the microtubule cytoskeleton and centriole. Its primary enzymatic role involves removing polyglutamyl modifications from tubulin proteins, a post-translational modification important for microtubule regulation. Disease relevance has emerged across multiple contexts. AGBL3 copy number variations at 7q33 are associated with neurodevelopmental delay and intellectual disability; deletions or duplications affecting AGBL3 (alongside neighboring genes) present with mild-to-moderate intellectual disability, dysmorphic features, and behavioral abnormalities characterized by aggressiveness and disinhibition 1. A novel nonsense variant (p.Gln257Ter) in AGBL3 was identified in a consanguineous family with hypocomplementaemic urticarial vasculitis syndrome (HUVS), a rare systemic condition featuring chr7 urticaria, vasculitis, and complement deficiency; molecular dynamics analysis demonstrated this truncation fundamentally alters the structural properties of the remaining protein 2. AGBL3 was also identified as a common key gene linking osteoporosis and stroke risk in bioinformatics analysis of clinical and genomic data 3. Additionally, AGBL3 participates in a fusion transcript (SLC6A3-AGBL3) identified in aggressive meningiomas, though this fusion likely produces a null allele 4. Clinical significance remains to be fully established, though AGBL3 variants show promise as biomarkers for neurodevelopmental, immunological, and potentially skeletal-cerebrovascular disorders.

Sources cited
1
AGBL3 CNVs at 7q33 are associated with intellectual disability, dysmorphic features, and behavioral phenotypes including aggressiveness and disinhibition
PMID: 29260337
2
A nonsense AGBL3 variant (p.Gln257Ter) is potentially associated with hypocomplementaemic urticarial vasculitis syndrome and alters protein structural dynamics
PMID: 41042736
3
AGBL3 is identified as a common key gene linking osteoporosis and stroke risk in bioinformatics analysis
PMID: 41379792
4
AGBL3 participates in fusion transcripts (SLC6A3-AGBL3) in aggressive meningiomas, creating de facto null alleles
PMID: 32949309
⚠Limited data available β€” This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜20
glaucomaOpen Targets
0.33Weak
ovarian dysfunctionOpen Targets
0.28Weak
ovarian neoplasmOpen Targets
0.28Weak
stomach diseaseOpen Targets
0.28Weak
diaphragmatic herniaOpen Targets
0.20Weak
Abnormality of the skeletal systemOpen Targets
0.18Weak
Umbilical herniaOpen Targets
0.17Weak
Hiatus herniaOpen Targets
0.12Weak
diverticular diseaseOpen Targets
0.12Weak
COVID-19Open Targets
0.12Weak
rheumatoid arthritisOpen Targets
0.11Weak
facial morphologyOpen Targets
0.08Suggestive
connective tissue diseaseOpen Targets
0.08Suggestive
cerebral atherosclerosisOpen Targets
0.08Suggestive
ventral herniaOpen Targets
0.06Suggestive
HerniaOpen Targets
0.06Suggestive
joint diseaseOpen Targets
0.05Suggestive
synovitisOpen Targets
0.04Suggestive
osteoporosisOpen Targets
0.02Suggestive
neoplasmOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar β†—
Related Genes
CAPN5Shared pathway100%CPA2Shared pathway100%CPB1Shared pathway100%CTRB1Shared pathway100%CTSOShared pathway100%LCN1Shared pathway100%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
Click a node to explore
AGBL3CAPN5CPA2CPB1CTRB1CTSOLCN1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q8NEM8
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.89LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.69 [0.55–0.89]
RankingsWhere AGBL3 stands among ~20K protein-coding genes
  • #15,788of 20,598
    Most Researched14
  • #8,026of 17,882
    Most Constrained (LOEUF)0.89
Genes detectedAGBL3
Sources retrieved4 papers
Response timeβ€”
πŸ“„ Sources
4
1
The contribution of 7q33 copy number variations for intellectual disability.
PMID: 29260337
Neurogenetics Β· 2018
1.00
2
Identification of novel fusion transcripts in meningioma.
PMID: 32949309
J Neurooncol Β· 2020
0.75
3
A novel AGBL3 variant potentially associated with hypocomplementaemic urticarial vasculitis syndrome: examining clinical outcomes and therapeutic responses.
PMID: 41042736
Clin Exp Rheumatol Β· 2025
0.50
4
Exploring the link between osteoporosis and stroke risk: An exploratory study based on 2017-2018 NHANES clinical data and bioinformatics analysis.
PMID: 41379792
PLoS One Β· 2025
0.25