HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
LCN1
lipocalin 1
Chromosome 9 · 9q34.3
NCBI Gene: 3933Ensembl: ENSG00000160349.10HGNC: HGNC:6525UniProt: P31025
86PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
GO:0005615signaling receptor bindingprotein bindingzinc ion bindingcervical carcinomaneurodegenerative diseasepulmonary arterial hypertensionhepatocellular carcinoma
✦AI Summary

LCN1 (lipocalin 1) encodes a small lipid-binding protein that functions primarily as a versatile molecular transporter in secretory fluids. The protein demonstrates broad ligand-binding capabilities, capable of binding various hydrophobic molecules including lipids, retinoids, and even microbial compounds due to its extremely wide ligand pocket 1. Originally identified as tear prealbumin, LCN1 serves as the principal lipid-binding protein in tear fluid but is also expressed in multiple tissues including lingual von Ebner's glands, prostate, nasal mucosa, and tracheal mucosa 1. Beyond its transport function, LCN1 exhibits unique cysteine proteinase inhibitory activity similar to cystatins, a property not found in other lipocalins 1. This suggests a protective role for epithelia by scavenging potentially harmful lipophilic substances 1. The LCN1 gene is located on chromosome 9 and contains six protein-coding exons spanning approximately 6.2 kb 23. Clinically, LCN1 has emerging significance as a biomarker for diabetic retinopathy, with sensitive detection methods being developed for monitoring disease severity and treatment response 4. Additionally, PON3::LCN1 fusion proteins have been identified in salivary acinic cell carcinoma, suggesting potential diagnostic and prognostic utility in cancer 5.

Sources cited
1
LCN1 binds various ligands including lipids and retinoids, shows cysteine proteinase inhibitory activity, and is expressed in multiple tissues beyond tears
PMID: 11058765
2
LCN1 gene is located on chromosome 9q34
PMID: 7835076
3
LCN1 gene structure contains six protein-coding exons spanning approximately 6.2 kb
PMID: 8112601
4
LCN1 serves as a biomarker for diabetic retinopathy with applications in disease monitoring
PMID: 37255030
5
PON3::LCN1 fusion proteins are found in salivary acinic cell carcinoma with potential diagnostic utility
PMID: 38682454
Disease Associationsⓘ20
cervical carcinomaOpen Targets
0.30Weak
neurodegenerative diseaseOpen Targets
0.25Weak
pulmonary arterial hypertensionOpen Targets
0.08Suggestive
hepatocellular carcinomaOpen Targets
0.08Suggestive
endometrial cancerOpen Targets
0.06Suggestive
neoplasmOpen Targets
0.06Suggestive
gastric ulcerOpen Targets
0.05Suggestive
renal cell carcinomaOpen Targets
0.05Suggestive
chronic obstructive pulmonary diseaseOpen Targets
0.05Suggestive
lymphedemaOpen Targets
0.05Suggestive
cancerOpen Targets
0.05Suggestive
non-small cell lung carcinomaOpen Targets
0.04Suggestive
colorectal carcinomaOpen Targets
0.03Suggestive
breast cancerOpen Targets
0.03Suggestive
sarcoidosisOpen Targets
0.03Suggestive
cardiomyopathyOpen Targets
0.03Suggestive
infectionOpen Targets
0.03Suggestive
AnxietyOpen Targets
0.03Suggestive
dilated cardiomyopathyOpen Targets
0.03Suggestive
fetal growth restrictionOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
PGA4Shared pathway100%PGA3Shared pathway100%CAPN14Shared pathway100%CTRB2Shared pathway100%CAPN8Shared pathway100%PRSS48Shared pathway100%
Tissue Expression6 tissues
Brain
100%
Lung
50%
Bone Marrow
50%
Ovary
50%
Heart
0%
Liver
0%
Gene Interaction Network
Click a node to explore
LCN1PGA4PGA3CAPN14CTRB2CAPN8PRSS48
PROTEIN STRUCTURE
Preparing viewer…
PDB1XKI · 1.80 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.62LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.16 [0.85–1.62]
RankingsWhere LCN1 stands among ~20K protein-coding genes
  • #5,547of 20,598
    Most Researched86
  • #15,761of 17,882
    Most Constrained (LOEUF)1.62
Genes detectedLCN1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Biomarkers of ocular allergy and dry eye disease.
PMID: 37876509
Rom J Ophthalmol · 2023
1.00
2
PON3::LCN1 and HTN3::MSANTD3 Gene Fusions With NR4A3/NR4A2 Expression in Salivary Acinic Cell Carcinoma.
PMID: 38682454
Am J Surg Pathol · 2024
0.90
3
Structure and organization of the porcine LCN1 gene encoding Tear lipocalin/von Ebner's gland protein.
PMID: 9427546
Gene · 1997
0.80
4
Prognostic significance of G6PD expression and localization in lung adenocarcinoma.
PMID: 29753088
Biochim Biophys Acta Proteins Proteom · 2019
0.70
5
Confirmation of 9q34 as the chromosomal site of the human lipocalin LCN1 gene.
PMID: 7835076
Cytogenet Cell Genet · 1995
0.60