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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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AGO3
argonaute RISC catalytic component 3
Chromosome 1 · 1p34.3
NCBI Gene: 192669Ensembl: ENSG00000126070.21HGNC: HGNC:18421UniProt: B4E1P5
77PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly Constrained
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
miRNA-mediated gene silencing by mRNA destabilizationsiRNA-mediated gene silencing by mRNA destabilizationpre-miRNA processingmiRNA processingcanceralcohol drinkingAbnormal foot morphologycongenital deformities of limbs
✦AI Summary

AGO3 (Argonaute RISC catalytic component 3) is a key component of the RNA-induced silencing complex (RISC) that mediates RNA-mediated gene silencing through multiple mechanisms. AGO3 possesses RNA slicer activity, but unlike AGO2, this endonuclease activity is highly substrate-specific and requires both 5'- and 3'-flanking sequences around the guide-target complementarity region 1. The protein binds to small RNAs including microRNAs and tinyRNAs (≤17-nt guide RNAs), with binding affinity influenced by specific nucleotide sequence features, particularly YRHB tetranucleotides near the 3'-end 2. AGO3 plays crucial roles in stem cell regulation by processing DICER-dependent repeat-induced RNAs derived from retinoic acid-activated DR2 Alu repeats, leading to degradation of stem cell mRNAs like Nanog through recruitment of decapping complexes 3. The protein also functions with cityRNAs (14-nt cleavage-inducing tinyRNAs) to enhance endonuclease activity and mediate gene silencing primarily through target cleavage rather than translational repression 4. AGO3 has been implicated in neurodevelopmental disorders, with de novo variants identified in unsolved NDD cohorts 5. Additionally, AGO3 participates in muscle regeneration by mediating tRNA-derived small RNA functions in inflammatory responses 6.

Sources cited
1
AGO3 has slicer activity that depends on guide RNA sequence and requires 5'- and 3'-flanking sequences
PMID: 29040713
2
miRNA binding affinity to AGO3 is influenced by YRHB tetranucleotide abundance near 3'-end
PMID: 21634124
3
AGO3 processes DR2 Alu-derived RNAs and recruits decapping complexes for stem cell mRNA degradation
PMID: 23064648
4
AGO3 functions with cityRNAs for target cleavage and gene silencing
PMID: 39368090
5
AGO3 variants identified in neurodevelopmental disorder cohorts
PMID: 38965372
6
AGO3 mediates tRNA-derived small RNA functions in muscle regeneration
PMID: 36755335
Disease Associationsⓘ20
cancerOpen Targets
0.46Moderate
alcohol drinkingOpen Targets
0.24Weak
Abnormal foot morphologyOpen Targets
0.23Weak
congenital deformities of limbsOpen Targets
0.23Weak
strictureOpen Targets
0.22Weak
schizophreniaOpen Targets
0.12Weak
Abnormal central motor functionOpen Targets
0.10Weak
cervical cancerOpen Targets
0.04Suggestive
lung cancerOpen Targets
0.03Suggestive
placenta praeviaOpen Targets
0.02Suggestive
influenzaOpen Targets
0.02Suggestive
infectionOpen Targets
0.01Suggestive
gastric cancerOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
Alzheimer diseaseOpen Targets
0.01Suggestive
breast cancerOpen Targets
0.01Suggestive
Pick diseaseOpen Targets
0.01Suggestive
autism spectrum disorderOpen Targets
0.01Suggestive
melanomaOpen Targets
0.01Suggestive
psoriasisOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
DDX6Protein interaction100%LIMD1Protein interaction100%XPO5Protein interaction100%TNRC6CProtein interaction100%DCP2Protein interaction100%HSP90AA1Protein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
96%
Ovary
83%
Liver
73%
Lung
68%
Heart
51%
Gene Interaction Network
Click a node to explore
AGO3DDX6LIMD1XPO5TNRC6CDCP2HSP90AA1
PROTEIN STRUCTURE
Preparing viewer…
PDB5VM9 · 3.28 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.23Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.15 [0.10–0.23]
RankingsWhere AGO3 stands among ~20K protein-coding genes
  • #6,129of 20,598
    Most Researched77
  • #646of 17,882
    Most Constrained (LOEUF)0.23 · top 5%
Genes detectedAGO3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
tRNA-derived small RNA, 5'tiRNA-Gly-CCC, promotes skeletal muscle regeneration through the inflammatory response.
PMID: 36755335
J Cachexia Sarcopenia Muscle · 2023
1.00
2
Target cleavage and gene silencing by Argonautes with cityRNAs.
PMID: 39368090
Cell Rep · 2024
0.90
3
Anatomy of four human Argonaute proteins.
PMID: 35736234
Nucleic Acids Res · 2022
0.80
4
DICER- and AGO3-dependent generation of retinoic acid-induced DR2 Alu RNAs regulates human stem cell proliferation.
PMID: 23064648
Nat Struct Mol Biol · 2012
0.70
5
Human Argonaute3 has slicer activity.
PMID: 29040713
Nucleic Acids Res · 2017
0.60