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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
ALPI
alkaline phosphatase, intestinal
Chromosome 2 Β· 2q37.1
NCBI Gene: 248Ensembl: ENSG00000163295.5HGNC: HGNC:437UniProt: P09923
75PubMed Papers
20Diseases
0Drugs
1Pathogenic Variants
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingprotease bindingzinc ion bindingmagnesium ion bindinginflammatory bowel diseaseneurodegenerative diseasevertebral column disorderurolithiasis
✦AI Summary

ALPI (alkaline phosphatase, intestinal) encodes intestinal alkaline phosphatase, a brush border metalloenzyme with critical roles in gut homeostasis and mucosal defense. Primary function: ALPI catalyzes hydrolysis of phosphate groups from various substrates, including the lipid A moiety of lipopolysaccharides (LPS), a Toll-like receptor 4 agonist 1. The gene produces two alternatively spliced transcript variants (aAug10 and bAug10); only the aAug10 variant exhibits detectable alkaline phosphatase activity, while bAug10 lacks the central N-terminal Ξ±-helix and critical residues near the active site 2. Mechanism: ALPI functions as a gut mucosal defense factor by detoxifying bacterial LPS and regulating host-microbiota interactions, thereby restraining inflammatory responses 1. Disease relevance: Biallelic ALPI mutations cause inflammatory bowel disease through loss-of-function mechanisms that impair protein stability or catalytic activity, rendering ALPI unable to neutralize LPS signaling 1. Clinical significance: ALPI mutations should be included in screening for monogenic causes of inflammatory bowel disease, and ALPI-based treatments represent novel therapeutic targets for intestinal inflammatory disorders 1. ALPI expression is upregulated by vitamin D, suggesting nutritional regulation of this protective pathway 2.

Sources cited
1
ALPI encodes intestinal alkaline phosphatase that hydrolyzes lipid A from LPS to reduce TLR4 signaling; biallelic mutations cause inflammatory bowel disease through loss-of-function mechanisms
PMID: 29567797
2
ALPI produces two alternatively spliced variants; only aAug10 has alkaline phosphatase activity; bAug10 lacks critical N-terminal structures; vitamin D upregulates both variants
PMID: 36047100
⚠Limited data available β€” This gene has 2 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜20
inflammatory bowel diseaseOpen Targets
0.50Moderate
neurodegenerative diseaseOpen Targets
0.36Weak
vertebral column disorderOpen Targets
0.31Weak
urolithiasisOpen Targets
0.30Weak
response to antibioticOpen Targets
0.25Weak
neuroinflammatory disorderOpen Targets
0.22Weak
familial glucocorticoid deficiencyOpen Targets
0.16Weak
chronic primary adrenal insufficiencyOpen Targets
0.15Weak
cancerOpen Targets
0.11Weak
neoplasmOpen Targets
0.10Weak
Progressive visual lossOpen Targets
0.10Suggestive
head and neck squamous cell carcinomaOpen Targets
0.09Suggestive
hepatocellular carcinomaOpen Targets
0.09Suggestive
Mobius syndromeOpen Targets
0.09Suggestive
type 2 diabetes mellitusOpen Targets
0.07Suggestive
Myocardial IschemiaOpen Targets
0.07Suggestive
cirrhosis of liverOpen Targets
0.07Suggestive
glioblastoma multiformeOpen Targets
0.07Suggestive
non-small cell lung carcinomaOpen Targets
0.07Suggestive
lung cancerOpen Targets
0.06Suggestive
Pathogenic Variants1
NM_001631.5(ALPI):c.1315C>T (p.Gln439Ter)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2021β†’ Residue 439
View on ClinVar β†—
Related Genes
DUSP13AShared pathway100%DUSP28Shared pathway100%DUSP8Shared pathway100%GCH1Protein interaction100%NTPCRProtein interaction91%PTSProtein interaction90%
Tissue Expression6 tissues
Liver
100%
Heart
0%
Brain
0%
Ovary
0%
Lung
0%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
ALPIDUSP13ADUSP28DUSP8GCH1NTPCRPTS
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt P09923
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.16LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.92 [0.73–1.16]
RankingsWhere ALPI stands among ~20K protein-coding genes
  • #6,307of 20,598
    Most Researched75
  • #4,977of 5,498
    Most Pathogenic Variants1
  • #12,155of 17,882
    Most Constrained (LOEUF)1.16
Genes detectedALPI
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Pembrolizumab versus placebo as adjuvant therapy for completely resected stage IB-IIIA non-small-cell lung cancer (PEARLS/KEYNOTE-091): an interim analysis of a randomised, triple-blind, phase 3 trial.
PMID: 36108662
Lancet Oncol Β· 2022
1.00
2
Characterization and Structure of Alternatively Spliced Transcript Variant of Human Intestinal Alkaline Phosphatase (ALPI) Gene.
PMID: 36047100
J Nutr Sci Vitaminol (Tokyo) Β· 2022
0.90
3
Duodenal chemosensing.
PMID: 30124472
Curr Opin Gastroenterol Β· 2018
0.80
4
Human ALPI deficiency causes inflammatory bowel disease and highlights a key mechanism of gut homeostasis.
PMID: 29567797
EMBO Mol Med Β· 2018
0.70
5
Alpinetin: a Dietary Flavonoid with Diverse Anticancer Effects.
PMID: 35567708
Appl Biochem Biotechnol Β· 2022
0.60