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GeneE
25 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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ALPL
alkaline phosphatase, biomineralization associated
Chromosome 1 Β· 1p36.12
NCBI Gene: 249Ensembl: ENSG00000162551.15HGNC: HGNC:438UniProt: P05186
300PubMed Papers
23Diseases
0Drugs
533Pathogenic Variants
RESEARCH IMPACT
TrendingVariant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
alkaline phosphatase activityphosphoethanolamine phosphatase activitypyrophosphatase activitypyridoxal phosphatase activityhypophosphatasiainfantile hypophosphatasiaadult hypophosphatasiaodontohypophosphatasia
✦AI Summary

ALPL encodes tissue-nonspecific alkaline phosphatase (TNSALP), a critical enzyme for skeletal and dental mineralization that hydrolyzes phosphate compounds including inorganic pyrophosphate (PPi), pyridoxal 5'-phosphate (PLP), and N-phosphocreatine. In bone mineralization, ALPL hydrolyzes extracellular PPi, a potent mineralization inhibitor, thereby promoting hydroxyapatite crystal formation and increasing inorganic phosphate concentration 1. ALPL also dephosphorylates PLP to its transportable form pyridoxal, providing essential vitamin B6 cofactors for neurotransmitter synthesis in the brain 2. Additionally, ALPL mediates adaptive thermogenesis through futile creatine cycling in thermogenic fat cells and can dephosphorylate microbial products and immune ligands 3. Loss-of-function mutations in ALPL cause hypophosphatasia (HPP), characterized by persistently low serum alkaline phosphatase activity and elevated substrate levels 4. HPP presents as a heterogeneous spectrum from perinatal lethal forms with skeletal hypomineralization and seizures to mild adult-onset disease with musculoskeletal pain, dental problems, and stress fractures 2. Clinical severity correlates with residual TNSALP activity and variant-specific dominant-negative effects 5. Asfotase alfa enzyme replacement therapy has improved outcomes in severely affected children, though comprehensive multidisciplinary management addressing skeletal, neurological, and dental complications remains essential 2.

Sources cited
1
ALPL encodes TNSALP; low serum ALP and impaired bone/tooth mineralization are hallmarks of hypophosphatasia caused by ALPL mutations
PMID: 33931563
2
ALPL hydrolyzes PPi to promote mineralization; dephosphorylates PLP for vitamin B6 availability in brain; HPP presents with rickets, seizures, dental loss, and adult musculoskeletal manifestations
PMID: 40047955
3
CD10+ALPL+ neutrophils play a role in immune regulation and tumor microenvironment remodeling
PMID: 37689322
4
Hypophosphatasia due to ALPL mutations is the most common genetic cause of low serum ALP; measuring ALP substrates aids diagnosis
PMID: 36348061
5
ALPL variants show variable residual activity and dominant-negative effects; functional testing and protein modeling predict enzyme activity outcomes
PMID: 32160374
Disease Associationsβ“˜23
hypophosphatasiaOpen Targets
0.85Strong
infantile hypophosphatasiaOpen Targets
0.82Strong
adult hypophosphatasiaOpen Targets
0.76Strong
odontohypophosphatasiaOpen Targets
0.68Moderate
genetic disorderOpen Targets
0.54Moderate
osteogenesis imperfectaOpen Targets
0.53Moderate
mild hypophosphatasiaOpen Targets
0.53Moderate
nephrolithiasisOpen Targets
0.53Moderate
ALPL-related autosomal recessive hypophosphatasiaOpen Targets
0.52Moderate
perinatal lethal hypophosphatasiaOpen Targets
0.51Moderate
urolithiasisOpen Targets
0.50Moderate
ureterolithiasisOpen Targets
0.49Moderate
bladder calculusOpen Targets
0.47Moderate
Decreased circulating alkaline phosphatase activityOpen Targets
0.47Moderate
skeletal dysplasiaOpen Targets
0.46Moderate
ALPL-related autosomal dominant hypophosphatasiaOpen Targets
0.37Weak
childhood-onset hypophosphatasiaOpen Targets
0.37Weak
Alzheimer diseaseOpen Targets
0.33Weak
heart valve diseaseOpen Targets
0.33Weak
agingOpen Targets
0.31Weak
HypophosphatasiaUniProt
Hypophosphatasia, childhoodUniProt
Hypophosphatasia, infantileUniProt
Pathogenic Variants533
NM_000478.6(ALPL):c.1363G>A (p.Gly455Ser)Pathogenic
Infantile hypophosphatasia|Hypophosphatasia|not provided|Childhood hypophosphatasia|Adult hypophosphatasia|Adult hypophosphatasia;Childhood hypophosphatasia;Infantile hypophosphatasia
β˜…β˜…β˜†β˜†2026β†’ Residue 455
NM_000478.6(ALPL):c.110T>C (p.Leu37Pro)Pathogenic
not provided|Adult hypophosphatasia|ALPL-related disorder|Hypophosphatasia
β˜…β˜…β˜†β˜†2026β†’ Residue 37
NM_000478.6(ALPL):c.299C>T (p.Thr100Met)Pathogenic
not provided|Adult hypophosphatasia|ALPL-related disorder|Adult hypophosphatasia;Childhood hypophosphatasia;Infantile hypophosphatasia|Hypophosphatasia
β˜…β˜…β˜†β˜†2026β†’ Residue 100
NM_000478.6(ALPL):c.815G>A (p.Arg272His)Pathogenic
Hypophosphatasia|Infantile hypophosphatasia|not provided|Osteogenesis imperfecta|Adult hypophosphatasia|Childhood hypophosphatasia;Infantile hypophosphatasia;Adult hypophosphatasia|Childhood hypophosphatasia
β˜…β˜…β˜†β˜†2026β†’ Residue 272
NM_000478.6(ALPL):c.327C>A (p.Asp109Glu)Likely pathogenic
Hypophosphatasia
β˜…β˜…β˜†β˜†2026β†’ Residue 109
NM_000478.6(ALPL):c.1171dup (p.Arg391fs)Pathogenic
not provided|Infantile hypophosphatasia|Adult hypophosphatasia|Childhood hypophosphatasia;Infantile hypophosphatasia;Adult hypophosphatasia|Hypophosphatasia
β˜…β˜…β˜†β˜†2026β†’ Residue 391
NM_000478.6(ALPL):c.855C>G (p.Tyr285Ter)Pathogenic
not provided|Adult hypophosphatasia|Hypophosphatasia
β˜…β˜…β˜†β˜†2026β†’ Residue 285
NM_000478.6(ALPL):c.928dup (p.Ser310fs)Pathogenic
Hypophosphatasia
β˜…β˜…β˜†β˜†2026β†’ Residue 310
NM_000478.6(ALPL):c.862+1G>CPathogenic
Hypophosphatasia
β˜…β˜…β˜†β˜†2026
NM_000478.6(ALPL):c.526G>A (p.Ala176Thr)Pathogenic
Infantile hypophosphatasia|Childhood hypophosphatasia|Adult hypophosphatasia;Childhood hypophosphatasia;Infantile hypophosphatasia|not provided|Hypophosphatasia|Adult hypophosphatasia|Osteogenesis imperfecta|ALPL-related disorder|Hypophosphataemia or rickets
β˜…β˜…β˜†β˜†2026β†’ Residue 176
NM_000478.6(ALPL):c.791A>G (p.Lys264Arg)Pathogenic
Infantile hypophosphatasia|Hypophosphatasia|not provided|Adult hypophosphatasia;Childhood hypophosphatasia;Infantile hypophosphatasia|Adult hypophosphatasia
β˜…β˜…β˜†β˜†2026β†’ Residue 264
NM_000478.6(ALPL):c.891C>A (p.Tyr297Ter)Pathogenic
Infantile hypophosphatasia|not provided|Hypophosphatasia|Adult hypophosphatasia
β˜…β˜…β˜†β˜†2026β†’ Residue 297
NM_000478.6(ALPL):c.188G>T (p.Gly63Val)Pathogenic
not provided|Childhood hypophosphatasia;Infantile hypophosphatasia;Adult hypophosphatasia|Hypophosphatasia
β˜…β˜…β˜†β˜†2026β†’ Residue 63
NM_000478.6(ALPL):c.550C>T (p.Arg184Trp)Pathogenic
Inborn genetic diseases|Infantile hypophosphatasia|not provided|Hypophosphatasia|Osteogenesis imperfecta|Adult hypophosphatasia|Odontohypophosphatasia
β˜…β˜…β˜†β˜†2026β†’ Residue 184
NM_000478.6(ALPL):c.211C>G (p.Arg71Gly)Pathogenic
not provided|Hypophosphatasia
β˜…β˜…β˜†β˜†2026β†’ Residue 71
NM_000478.6(ALPL):c.512A>G (p.His171Arg)Pathogenic
not provided|Hypophosphatasia|Adult hypophosphatasia
β˜…β˜…β˜†β˜†2026β†’ Residue 171
NM_000478.6(ALPL):c.571G>A (p.Glu191Lys)Pathogenic
Infantile hypophosphatasia|Childhood hypophosphatasia|Adult hypophosphatasia|Hypophosphatasia|not provided|Infantile hypophosphatasia;Childhood hypophosphatasia;Adult hypophosphatasia|Odontohypophosphatasia|Osteogenesis imperfecta|Inborn genetic diseases|ALPL-related disorder|See cases|Hypophosphatasia;Infantile hypophosphatasia;Childhood hypophosphatasia;Adult hypophosphatasia|ALPL-related autosomal dominant hypophosphatasia
β˜…β˜…β˜†β˜†2026β†’ Residue 191
NM_000478.6(ALPL):c.152C>T (p.Ala51Val)Pathogenic
Hypophosphatasia|not provided|Adult hypophosphatasia
β˜…β˜…β˜†β˜†2026β†’ Residue 51
NM_000478.6(ALPL):c.881A>C (p.Asp294Ala)Pathogenic
Infantile hypophosphatasia|Childhood hypophosphatasia|Adult hypophosphatasia|not provided|Hypophosphatasia|Osteogenesis imperfecta|Adult hypophosphatasia;Childhood hypophosphatasia;Infantile hypophosphatasia|ALPL-related disorder|Inborn genetic diseases
β˜…β˜…β˜†β˜†2026β†’ Residue 294
NM_000478.6(ALPL):c.661G>C (p.Gly221Arg)Pathogenic
Infantile hypophosphatasia|not provided|Hypophosphatasia|Adult hypophosphatasia
β˜…β˜…β˜†β˜†2026β†’ Residue 221
View on ClinVar β†—
Related Genes
SEC11CProtein interaction100%GCH1Protein interaction100%ENPP1Protein interaction99%RUNX2Protein interaction96%NTPCRProtein interaction92%PTSProtein interaction90%
Tissue Expression6 tissues
Liver
100%
Lung
88%
Brain
11%
Heart
11%
Bone Marrow
5%
Ovary
3%
Gene Interaction Network
Click a node to explore
ALPLSEC11CGCH1ENPP1RUNX2NTPCRPTS
PROTEIN STRUCTURE
Preparing viewer…
PDB7YIW Β· 2.89 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.99LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.76 [0.59–0.99]
RankingsWhere ALPL stands among ~20K protein-coding genes
  • #1,163of 20,598
    Most Researched300 Β· top 10%
  • #98of 5,498
    Most Pathogenic Variants533 Β· top 5%
  • #9,454of 17,882
    Most Constrained (LOEUF)0.99
Genes detectedALPL
Sources retrieved25 papers
Response timeβ€”
πŸ“„ Sources
25β–Ό
1
Diagnostic Approach to Patients with Low Serum Alkaline Phosphatase.
PMID: 36348061
Calcif Tissue Int Β· 2023
1.00
2
Large-scale in vitro functional testing and novel variant scoring via protein modeling provide insights into alkaline phosphatase activity in hypophosphatasia.
PMID: 32160374
Hum Mutat Β· 2020
0.90
3
Hypophosphatasia.
PMID: 33931563
J Clin Pathol Β· 2021
0.80
4
Immunosuppressive CD10
PMID: 37689322
J Hepatol Β· 2023
0.70
5
Highly conserved brain vascular receptor ALPL mediates transport of engineered AAV vectors across the blood-brain barrier.
PMID: 40340250
Mol Ther Β· 2025
0.64