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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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ANKRD55
ankyrin repeat domain 55
Chromosome 5 · 5q11.2
NCBI Gene: 79722Ensembl: ENSG00000164512.18HGNC: HGNC:25681UniProt: Q3KP44
29PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingrheumatoid arthritisopen-angle glaucomamultiple sclerosisCrohn's disease
✦AI Summary

ANKRD55 (ankyrin repeat domain 55) is a nuclear protein predominantly expressed in CD4+ T cells that functions as a critical regulator of T cell-mediated inflammation and immune responses 1. The protein contains ankyrin repeat domains that facilitate protein-protein interactions 2, and genetic variants in ANKRD55 are associated with multiple sclerosis (MS), rheumatoid arthritis, and type 2 diabetes risk 34. Mechanistically, ANKRD55 regulates T cell receptor (TCR) signaling by interacting with subunits of the chaperonin-containing TCP1 (CCT) complex to modulate immune synapse formation and proper microtubule organization 1. ANKRD55 deficiency impairs Th1 and Th17 differentiation in experimental autoimmune encephalomyelitis, reducing disease severity and neuroinflammation 1. The protein also localizes to nuclear speckles and participates in mitotic spindle dynamics through interactions with cohesin complexes and tubulin 2. MS-associated risk alleles correlate with elevated ANKRD55 expression in CD4+ T cells and dendritic cells 56, while ANKRD55 variants associate with decreased insulin sensitivity in type 2 diabetes 7. ANKRD55 represents a therapeutic target for pathogenic T cell-driven autoimmune diseases.

Sources cited
1
ANKRD55 is a key regulator of TCR signaling, immune synapse formation, and Th1/Th17 differentiation; its deficiency reduces EAE disease severity
PMID: 41090353
2
ANKRD55 interactome includes nuclear transport proteins, cell cycle regulators, and interaction with CCT complex subunits; localizes to nucleus and involved in mitosis
PMID: 31620119
3
ANKRD55 identified as gene target for rheumatoid arthritis through integration of GWAS and eQTL data
PMID: 27019110
4
ANKRD55 SNP rs6859219 associated with MS risk with genome-wide significance
PMID: 22130326
5
MS risk SNPs in ANKRD55 introns associated with higher ANKRD55 expression in CD4+ T cells; expression also in dendritic cells influenced by inflammatory signals
PMID: 35111166
6
ANKRD55 expressed predominantly in CD4+ T cells and CD4+ T cell-derived lines; risk allele rs6859219 increases transcript levels; protein detected in CNS-infiltrating cells in EAE
PMID: 27183579
7
ANKRD55 rs459193 associated with decreased insulin sensitivity and type 2 diabetes risk
PMID: 23457408
Disease Associationsⓘ20
rheumatoid arthritisOpen Targets
0.50Moderate
open-angle glaucomaOpen Targets
0.45Moderate
multiple sclerosisOpen Targets
0.44Moderate
Crohn's diseaseOpen Targets
0.42Moderate
connective tissue diseaseOpen Targets
0.41Moderate
type 1 diabetes mellitusOpen Targets
0.41Moderate
glaucomaOpen Targets
0.39Weak
autoimmune diseaseOpen Targets
0.39Weak
ACPA-negative rheumatoid arthritisOpen Targets
0.37Weak
coronary artery diseaseOpen Targets
0.37Weak
arthritisOpen Targets
0.36Weak
atopic eczemaOpen Targets
0.35Weak
psoriasisOpen Targets
0.34Weak
ACPA-positive rheumatoid arthritisOpen Targets
0.34Weak
systemic lupus erythematosusOpen Targets
0.34Weak
hypertensionOpen Targets
0.34Weak
tooth diseaseOpen Targets
0.33Weak
alcohol drinkingOpen Targets
0.33Weak
placenta praeviaOpen Targets
0.32Weak
ankylosing spondylitisOpen Targets
0.32Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
IFT74Protein interaction100%IFT52Protein interaction83%IFT46Protein interaction83%IFT70AProtein interaction83%IFT70BProtein interaction83%
Tissue Expression6 tissues
Bone Marrow
100%
Liver
84%
Brain
35%
Lung
29%
Ovary
16%
Heart
14%
Gene Interaction Network
Click a node to explore
ANKRD55IFT74IFT52IFT46IFT70AIFT70B
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q3KP44
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.84LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.64 [0.49–0.84]
RankingsWhere ANKRD55 stands among ~20K protein-coding genes
  • #12,092of 20,598
    Most Researched29
  • #7,276of 17,882
    Most Constrained (LOEUF)0.84
Genes detectedANKRD55
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets.
PMID: 27019110
Nat Genet · 2016
1.00
2
ANKRD55 is a key regulator of T cell inflammation in multiple sclerosis.
PMID: 41090353
J Clin Invest · 2025
0.90
3
Genomic Multiple Sclerosis Risk Variants Modulate the Expression of the
PMID: 35111166
Front Immunol · 2021
0.80
4
Interactome of the Autoimmune Risk Protein ANKRD55.
PMID: 31620119
Front Immunol · 2019
0.70
5
Novel Insights into the Multiple Sclerosis Risk Gene ANKRD55.
PMID: 27183579
J Immunol · 2016
0.60