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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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AP5B1
adaptor related protein complex 5 subunit beta 1
Chromosome 11 · 11q13.1
NCBI Gene: 91056Ensembl: ENSG00000254470.4HGNC: HGNC:25104UniProt: Q2VPB7
26PubMed Papers
20Diseases
0Drugs
4Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindinglysosomal membraneendosomal transportAP-type membrane coat adaptor complexhereditary spastic paraplegiaerythematosquamous dermatosispsoriasisbreast cancer
✦AI Summary

AP5B1 encodes a subunit of the AP-5 (adaptor protein complex 5), a vesicular trafficking component involved in endosomal transport and lysosomal homeostasis 1. As part of the AP-5 complex, AP5B1 localizes to late endosomes and the Golgi apparatus, functioning in intracellular trafficking to maintain cellular homeostasis and proper lysosomal pathway functioning 1. Bi-allelic loss-of-function variants in AP5B1 cause autosomal recessive hereditary macular dystrophy, particularly affecting the retinal pigment epithelium (RPE)—a tissue with intense lysosomal and phagocytic activity 1. Beyond retinal disease, AP5B1 variants associate with immune-related conditions: genome-wide studies identify AP5B1 as a susceptibility locus for psoriasis 2, the atopic march (eczema progressing to asthma) 3, and asthma risk through pleiotropic effects on IgG N-glycosylation 4. AP5B1 functions as a key driver in FcγR-mediated phagocytosis and Toll-like receptor signaling pathways, with bidirectional interactions with neutrophil abundance associated with peanut allergy reaction thresholds 5. Preliminary evidence suggests AP5B1 variants may predispose to diabetic kidney disease in diabetic retinopathy patients 6 and possibly pediatric sarcoidosis 7. The gene's broad involvement in vesicular trafficking and immune regulation explains its pleiotropic disease associations.

Sources cited
1
AP5B1 bi-allelic variants cause hereditary macular dystrophy; AP5B1 is part of the AP-5 complex involved in endosomal transport and lysosomal homeostasis; AP5B1 localizes to late endosomes and Golgi in RPE cells
PMID: 40081374
2
AP5B1 is a susceptibility locus for psoriasis identified through whole-exome array analysis
PMID: 25854761
3
AP5B1/OVOL1 locus is associated with the atopic march (eczema followed by asthma)
PMID: 26542096
4
AP5B1 locus shows pleiotropic effects on IgG N-glycosylation and asthma risk
PMID: 33710309
5
AP5B1 is a key driver in FcγR-mediated phagocytosis and Toll-like receptor signaling pathways with bidirectional causal relationships to neutrophil abundance in peanut allergy
PMID: 38272374
6
AP5B1 gene loci rs6591190 and rs12146493 may associate with increased susceptibility to diabetic kidney disease in diabetic retinopathy patients
PMID: 40391008
7
AP5B1 identified as a candidate gene with potential role in autophagy and intracellular trafficking in pediatric sarcoidosis
PMID: 29510755
Disease Associationsⓘ20
hereditary spastic paraplegiaOpen Targets
0.16Weak
erythematosquamous dermatosisOpen Targets
0.12Weak
psoriasisOpen Targets
0.11Weak
breast cancerOpen Targets
0.10Suggestive
systemic lupus erythematosusOpen Targets
0.09Suggestive
goutOpen Targets
0.08Suggestive
hypertensionOpen Targets
0.08Suggestive
luminal A breast carcinomaOpen Targets
0.07Suggestive
cardiomyopathyOpen Targets
0.07Suggestive
essential hypertensionOpen Targets
0.06Suggestive
Eczematoid dermatitisOpen Targets
0.05Suggestive
dermatitisOpen Targets
0.05Suggestive
asthmaOpen Targets
0.05Suggestive
atopic eczemaOpen Targets
0.05Suggestive
nutritional deficiency diseaseOpen Targets
0.05Suggestive
prostate carcinomaOpen Targets
0.05Suggestive
acneOpen Targets
0.04Suggestive
allergic rhinitisOpen Targets
0.04Suggestive
respiratory system diseaseOpen Targets
0.04Suggestive
allergic diseaseOpen Targets
0.04Suggestive
Pathogenic Variants4
NM_138368.5(AP5B1):c.2191C>T (p.Arg731Ter)Pathogenic
AP5B1-associated macular dystrophy
★☆☆☆2025→ Residue 731
NM_138368.5(AP5B1):c.310del (p.Leu104fs)Likely pathogenic
Macular dystrophy with or without extraocular features
★☆☆☆2024→ Residue 104
NM_138368.5(AP5B1):c.463C>T (p.Arg155Ter)Likely pathogenic
Macular dystrophy with or without extraocular features
★☆☆☆2024→ Residue 155
NM_138368.5(AP5B1):c.862del (p.Gln288fs)Likely pathogenic
Macular dystrophy with or without extraocular features
★☆☆☆2024→ Residue 288
View on ClinVar ↗
Related Genes
AP5M1Protein interaction95%AP2A1Protein interaction92%AP2A2Protein interaction92%AP2B1Protein interaction92%AP2M1Protein interaction92%AP1S1Protein interaction92%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
61%
Liver
22%
Heart
14%
Ovary
14%
Brain
13%
Gene Interaction Network
Click a node to explore
AP5B1AP5M1AP2A1AP2A2AP2B1AP2M1AP1S1
PROTEIN STRUCTURE
Preparing viewer…
PDB8YAB · 3.26 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.42LoF Tolerant
pLIⓘ
0.01Tolerant
Observed/Expected LoF0.76 [0.43–1.42]
RankingsWhere AP5B1 stands among ~20K protein-coding genes
  • #12,733of 20,598
    Most Researched26
  • #3,842of 5,498
    Most Pathogenic Variants4
  • #14,672of 17,882
    Most Constrained (LOEUF)1.42
Genes detectedAP5B1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Bi-allelic variants in three genes encoding distinct subunits of the vesicular AP-5 complex cause hereditary macular dystrophy.
PMID: 40081374
Am J Hum Genet · 2025
1.00
2
Comprehensive analysis of coding variants highlights genetic complexity in developmental and epileptic encephalopathy.
PMID: 31175295
Nat Commun · 2019
0.90
3
Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.
PMID: 25854761
Nat Commun · 2015
0.80
4
Multivariate genome-wide analysis of immunoglobulin G N-glycosylation identifies new loci pleiotropic with immune function.
PMID: 33710309
Hum Mol Genet · 2021
0.70
5
Development and validation of a risk prediction model for diabetic kidney disease in patients with diabetic retinopathy.
PMID: 40391008
Front Endocrinol (Lausanne) · 2025
0.60