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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
AP5Z1
adaptor related protein complex 5 subunit zeta 1
Chromosome 7 Β· 7p22.1
NCBI Gene: 9907Ensembl: ENSG00000242802.10HGNC: HGNC:22197UniProt: O43299
28PubMed Papers
21Diseases
0Drugs
71Pathogenic Variants
FUNCTIONAL ROLE
DNA RepairHomologous RecombinationTransporter
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingdouble-strand break repair via homologous recombinationendosomal transportnucleusAutosomal recessive spastic paraplegia type 48hereditary spastic paraplegia 48hereditary spastic paraplegiaRetinal dystrophy
✦AI Summary

AP5Z1 encodes the zeta-1 subunit of the AP-5 adaptor protein complex, a component of the intracellular trafficking machinery with multiple critical functions. As part of the AP-5 complex, AP5Z1 participates in endosomal transport and lysosomal pathway maintenance 1. The protein localizes to late endosomes and the Golgi apparatus 1 and plays a role in regulating autophagy and lysosomal organization 2. Biallelic AP5Z1 mutations cause spastic paraplegia 48 (SPG48), a neurodegenerative disorder characterized by progressive lower limb spasticity and pyramidal weakness 34. Disease pathogenesis involves impaired mitochondrial dynamics, with reduced mitochondrial length and density in axons, decreased membrane potential, and abnormal balance between mitochondrial fission and fusion 5. Additionally, AP5Z1 disruption sensitizes the non-canonical inflammasome pathway, contributing to neuro-inflammation 6. Beyond neurodegeneration, AP5Z1 has oncogenic roles in hepatocellular carcinoma, where elevated expression promotes cell growth and suppresses apoptosis by ubiquitinating PTEN and modulating the PI3K/Akt/mTOR pathway 2. AP5Z1 variants also cause hereditary macular dystrophy affecting the retinal pigment epithelium 1, highlighting tissue-specific importance of AP-5-mediated lysosomal function.

Sources cited
1
AP5Z1 is a subunit of the AP-5 vesicular complex involved in intracellular trafficking, lysosomal pathways, and maintenance of macular function; bi-allelic variants cause inherited retinal disease
PMID: 40081374
2
AP5Z1 promotes hepatocellular carcinoma growth and reduces apoptosis by regulating PTEN ubiquitination and modulating the PI3K/Akt/mTOR pathway
PMID: 40394639
3
AP5Z1 mutations cause spastic paraplegia type 48 with reduced protein expression and impaired autophagy
PMID: 39059408
4
Biallelic AP5Z1 variants cause SPG48, a rare neurodegenerative disorder with progressive spasticity
PMID: 41808431
5
AP5Z1 mutations in SPG48 cause impaired mitochondrial dynamics with reduced mitochondrial length and density in axons, treatable with DRP1 inhibition
PMID: 29726929
6
AP5Z1 disruption sensitizes the non-canonical inflammasome pathway, contributing to neuroinflammation in SPG48
PMID: 41138668
Disease Associationsβ“˜21
Autosomal recessive spastic paraplegia type 48Open Targets
0.77Strong
hereditary spastic paraplegia 48Open Targets
0.71Strong
hereditary spastic paraplegiaOpen Targets
0.60Moderate
Retinal dystrophyOpen Targets
0.50Moderate
hereditary sensory and autonomic neuropathy with spastic paraplegiaOpen Targets
0.41Moderate
neurodegenerative diseaseOpen Targets
0.37Weak
genetic disorderOpen Targets
0.34Weak
restless legs syndromeOpen Targets
0.32Weak
response to xenobiotic stimulusOpen Targets
0.32Weak
poisoningOpen Targets
0.31Weak
optic atrophyOpen Targets
0.15Weak
Spastic paraplegiaOpen Targets
0.12Weak
myopiaOpen Targets
0.11Weak
pathological myopiaOpen Targets
0.11Weak
Abnormality of the skeletal systemOpen Targets
0.09Suggestive
duodenal ulcerOpen Targets
0.09Suggestive
gastric ulcerOpen Targets
0.09Suggestive
hypothyroidismOpen Targets
0.08Suggestive
hepatocellular carcinomaOpen Targets
0.08Suggestive
myxedemaOpen Targets
0.07Suggestive
Spastic paraplegia 48, autosomal recessiveUniProt
Pathogenic Variants71
NM_014855.3(AP5Z1):c.1033C>T (p.Arg345Ter)Pathogenic
Hereditary spastic paraplegia 48|Hereditary spastic paraplegia|not provided|Macular dystrophy with or without extraocular features
β˜…β˜…β˜†β˜†2025β†’ Residue 345
NM_014855.3(AP5Z1):c.805C>T (p.Gln269Ter)Pathogenic
Macular dystrophy with or without extraocular features|Hereditary spastic paraplegia 48
β˜…β˜…β˜†β˜†2025β†’ Residue 269
NM_014855.3(AP5Z1):c.970-2_983delLikely pathogenic
Hereditary spastic paraplegia 48|Retinal dystrophy
β˜…β˜…β˜†β˜†2025
NM_014855.3(AP5Z1):c.1806-1G>CLikely pathogenic
Hereditary spastic paraplegia 48
β˜…β˜…β˜†β˜†2025
NM_014855.3(AP5Z1):c.1707+1G>ALikely pathogenic
Inborn genetic diseases|Hereditary spastic paraplegia 48
β˜…β˜…β˜†β˜†2025
NM_014855.3(AP5Z1):c.928C>T (p.Arg310Ter)Pathogenic
not provided|Hereditary spastic paraplegia 48|Macular dystrophy with or without extraocular features
β˜…β˜…β˜†β˜†2025β†’ Residue 310
NM_014855.3(AP5Z1):c.950dup (p.Asp317fs)Pathogenic
Hereditary spastic paraplegia 48|Macular dystrophy with or without extraocular features
β˜…β˜…β˜†β˜†2025β†’ Residue 317
NM_014855.3(AP5Z1):c.931C>T (p.Arg311Ter)Pathogenic
Hereditary spastic paraplegia 48|not provided|Macular dystrophy with or without extraocular features|Retinal dystrophy
β˜…β˜…β˜†β˜†2025β†’ Residue 311
NM_014855.3(AP5Z1):c.412C>T (p.Arg138Ter)Pathogenic
Hereditary spastic paraplegia 48|not provided|Macular dystrophy with or without extraocular features
β˜…β˜…β˜†β˜†2025β†’ Residue 138
NM_014855.3(AP5Z1):c.1732C>T (p.Gln578Ter)Pathogenic
Hereditary spastic paraplegia 48|Retinal dystrophy|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 578
NM_014855.3(AP5Z1):c.80_83delinsTGCTGTAAACTGTAACTGTAAA (p.Arg27_Ile28delinsLeuLeuTer)Pathogenic
Hereditary spastic paraplegia 48|Macular dystrophy with or without extraocular features|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 27
NM_014855.3(AP5Z1):c.1322G>A (p.Trp441Ter)Pathogenic
Hereditary spastic paraplegia 48|Hereditary spastic paraplegia|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 441
NM_014855.3(AP5Z1):c.868del (p.Arg290fs)Pathogenic
Hereditary spastic paraplegia 48|Hereditary spastic paraplegia
β˜…β˜…β˜†β˜†2024β†’ Residue 290
NM_014855.3(AP5Z1):c.1719del (p.Ser574fs)Pathogenic
not provided|Hereditary spastic paraplegia 48
β˜…β˜…β˜†β˜†2023β†’ Residue 574
NM_014855.3(AP5Z1):c.721C>T (p.Gln241Ter)Pathogenic
not provided|Hereditary spastic paraplegia 48
β˜…β˜…β˜†β˜†2022β†’ Residue 241
NM_014855.3(AP5Z1):c.355_358dup (p.Leu120fs)Pathogenic
not provided|Hereditary spastic paraplegia 48
β˜…β˜…β˜†β˜†2021β†’ Residue 120
NM_014855.3(AP5Z1):c.2086del (p.Gln696fs)Pathogenic
Hereditary spastic paraplegia 48
β˜…β˜†β˜†β˜†2025β†’ Residue 696
NM_014855.3(AP5Z1):c.2079_2091del (p.Cys693fs)Pathogenic
Hereditary spastic paraplegia 48
β˜…β˜†β˜†β˜†2025β†’ Residue 693
NM_014855.3(AP5Z1):c.1308dup (p.Lys437Ter)Pathogenic
Hereditary spastic paraplegia 48
β˜…β˜†β˜†β˜†2025β†’ Residue 437
NM_014855.3(AP5Z1):c.1068_1098del (p.Val357fs)Pathogenic
Hereditary spastic paraplegia 48
β˜…β˜†β˜†β˜†2025β†’ Residue 357
View on ClinVar β†—
Related Genes
AP4B1Protein interaction100%AP4E1Protein interaction100%TECPR2Protein interaction100%AP2A1Protein interaction97%AP2A2Protein interaction97%AP2B1Protein interaction97%
Tissue Expression6 tissues
Lung
100%
Bone Marrow
80%
Ovary
79%
Liver
78%
Brain
25%
Heart
23%
Gene Interaction Network
Click a node to explore
AP5Z1AP4B1AP4E1TECPR2AP2A1AP2A2AP2B1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt O43299
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.64LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF1.40 [1.20–1.64]
RankingsWhere AP5Z1 stands among ~20K protein-coding genes
  • #12,301of 20,598
    Most Researched28
  • #1,033of 5,498
    Most Pathogenic Variants71 Β· top quartile
  • #15,849of 17,882
    Most Constrained (LOEUF)1.64
Genes detectedAP5Z1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
AP5Z1 affects hepatocellular carcinoma growth and autophagy by regulating PTEN ubiquitination and modulating the PI3K/Akt/mTOR pathway.
PMID: 40394639
J Transl Med Β· 2025
1.00
2
Bi-allelic variants in three genes encoding distinct subunits of the vesicular AP-5 complex cause hereditary macular dystrophy.
PMID: 40081374
Am J Hum Genet Β· 2025
0.90
3
Early Diagnosis of AP5Z1/SPG48 Spastic Paraplegia: Case Report and Review of the Literature.
PMID: 39059408
Neuropediatrics Β· 2024
0.80
4
Expanding the Genotypic and Phenotypic Spectrum of AP5Z1-Related Spastic Paraplegia: A Novel Variant and Comprehensive Literature Review.
PMID: 41808431
Int J Dev Neurosci Β· 2026
0.70
5
AP5Z1/SPG48 frequency in autosomal recessive and sporadic spastic paraplegia.
PMID: 25333062
Mol Genet Genomic Med Β· 2014
0.60