HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
APRT
adenine phosphoribosyltransferase
Chromosome 16 Β· 16q24.3
NCBI Gene: 353Ensembl: ENSG00000198931.12HGNC: HGNC:626UniProt: P07741
133PubMed Papers
21Diseases
0Drugs
77Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingcytosolextracellular exosomeAMP bindingadenine phosphoribosyltransferase deficiencyneurodegenerative diseasepathological myopiachronic kidney disease
✦AI Summary

APRT (adenine phosphoribosyltransferase) catalyzes a salvage pathway reaction that converts adenine to AMP, providing an energetically efficient alternative to de novo purine synthesis 1. The enzyme functions primarily in the cytoplasm and cytosol, catalyzing adenine binding and AMP formation through its phosphoribosyltransferase activity 2. Loss of APRT function causes autosomal recessive APRT deficiency, a rare metabolic disorder characterized by hyperexcretion of 2,8-dihydroxyadenine (DHA) into urine 1. Due to DHA's low solubility, this leads to precipitation and formation of urinary crystals, stones, and crystal nephropathy 2. Clinical presentations vary widely, ranging from asymptomatic crystalluria detected on screening to severe manifestations including recurrent urolithiasis, acute kidney injury from obstructive uropathy, and progressive renal failure 32. Early diagnosis through stone analysis, crystalluria assessment, and APRT activity measurement is critical, as prompt treatment with xanthine oxidoreductase inhibitors significantly reduces DHA excretion and preserves kidney function 12. The variable clinical phenotypeβ€”even among siblings sharing identical mutationsβ€”reflects the disease's diagnostic challenge 3. Beyond renal disease, APRT participates in broader purine metabolism regulation, as demonstrated by studies showing APRT activation during viral infection and involvement in metabolic signaling pathways affecting inflammation 45.

Sources cited
1
APRT catalyzes salvage pathway to form AMP; APRT deficiency causes DHA hyperexcretion and urolithiasis/nephropathy; diagnostic tools and disease presentation details
PMID: 22700886
2
APRT deficiency is autosomal recessive; causes 2,8-DHA crystal nephropathy; varied clinical presentations including urolithiasis and AKI; treatment with xanthine oxidoreductase inhibitors preserves kidney function
PMID: 39982660
3
APRT deficiency results from APRT mutations causing variable phenotypic severity even in siblings with identical compound heterozygous variants
PMID: 37619970
4
APRT participates in purine salvage pathway activation during viral infection and metabolic signaling affecting inflammation through AMPK activation
PMID: 40517177
5
APRT functions in purine recycling; APRT deficiency results in metabolic disturbances and adenosine signaling reduction affecting neurobehavioral phenotypes
PMID: 38700995
6
APRT deficiency is a hereditary cause of urinary stones associated with 2,8-dihydroxyadenine lithiasis leading to chronic kidney damage through crystal deposition
PMID: 40583613
Disease Associationsβ“˜21
adenine phosphoribosyltransferase deficiencyOpen Targets
0.81Strong
neurodegenerative diseaseOpen Targets
0.40Moderate
pathological myopiaOpen Targets
0.27Weak
chronic kidney diseaseOpen Targets
0.24Weak
genetic disorderOpen Targets
0.19Weak
interstitial nephritisOpen Targets
0.19Weak
stage 5 chronic kidney diseaseOpen Targets
0.18Weak
neoplasmOpen Targets
0.10Weak
Alzheimer diseaseOpen Targets
0.10Weak
pulmonary tuberculosisOpen Targets
0.08Suggestive
infectionOpen Targets
0.08Suggestive
diabetes mellitusOpen Targets
0.08Suggestive
pneumoniaOpen Targets
0.07Suggestive
nephrotic syndromeOpen Targets
0.07Suggestive
familial idiopathic steroid-resistant nephrotic syndromeOpen Targets
0.07Suggestive
focal segmental glomerulosclerosisOpen Targets
0.07Suggestive
primary hyperoxaluria type 3Open Targets
0.07Suggestive
HyperglycinuriaOpen Targets
0.07Suggestive
Dent diseaseOpen Targets
0.07Suggestive
familial juvenile hyperuricemic nephropathy type 1Open Targets
0.07Suggestive
Adenine phosphoribosyltransferase deficiencyUniProt
Pathogenic Variants77
NM_000485.3(APRT):c.286_287del (p.Thr96fs)Pathogenic
Adenine phosphoribosyltransferase deficiency|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 96
NM_000485.3(APRT):c.397G>C (p.Gly133Arg)Likely pathogenic
Adenine phosphoribosyltransferase deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 133
NM_000485.3(APRT):c.289_290del (p.Leu97fs)Pathogenic
Adenine phosphoribosyltransferase deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 97
NM_000485.3(APRT):c.188G>A (p.Gly63Asp)Likely pathogenic
Adenine phosphoribosyltransferase deficiency|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 63
NM_000485.3(APRT):c.81-3C>GPathogenic
Adenine phosphoribosyltransferase deficiency
β˜…β˜…β˜†β˜†2025
NM_000485.3(APRT):c.200G>A (p.Arg67Gln)Likely pathogenic
Adenine phosphoribosyltransferase deficiency|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 67
NM_000485.3(APRT):c.518TCT[1] (p.Phe174del)Pathogenic
Adenine phosphoribosyltransferase deficiency|See cases|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 174
NM_000485.3(APRT):c.294G>A (p.Trp98Ter)Pathogenic
Adenine phosphoribosyltransferase deficiency
β˜…β˜…β˜†β˜†2024β†’ Residue 98
NM_000485.3(APRT):c.1A>G (p.Met1Val)Pathogenic
Adenine phosphoribosyltransferase deficiency|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 1
NM_000485.3(APRT):c.194A>T (p.Asp65Val)Pathogenic
Adenine phosphoribosyltransferase deficiency
β˜…β˜…β˜†β˜†2024β†’ Residue 65
NM_000485.3(APRT):c.259C>T (p.Arg87Ter)Pathogenic
Adenine phosphoribosyltransferase deficiency
β˜…β˜…β˜†β˜†2021β†’ Residue 87
NM_000485.3(APRT):c.80+2T>CPathogenic
not provided
β˜…β˜†β˜†β˜†2025
NM_000485.3(APRT):c.254del (p.Leu85fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 85
NM_000485.3(APRT):c.401-21A>TLikely pathogenic
Adenine phosphoribosyltransferase deficiency
β˜…β˜†β˜†β˜†2025
NM_000485.3(APRT):c.472_474del (p.Glu158del)Pathogenic
Adenine phosphoribosyltransferase deficiency
β˜…β˜†β˜†β˜†2025β†’ Residue 158
NM_000485.3(APRT):c.401-20C>GLikely pathogenic
Adenine phosphoribosyltransferase deficiency
β˜…β˜†β˜†β˜†2025
NM_000485.3(APRT):c.401-40_401-25delLikely pathogenic
Adenine phosphoribosyltransferase deficiency
β˜…β˜†β˜†β˜†2025
NM_000485.3(APRT):c.452_453dup (p.Glu152fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 152
NM_000485.3(APRT):c.541T>C (p.Ter181Arg)Likely pathogenic
Adenine phosphoribosyltransferase deficiency
β˜…β˜†β˜†β˜†2025β†’ Residue 181
NM_000485.3(APRT):c.3G>C (p.Met1Ile)Pathogenic
Adenine phosphoribosyltransferase deficiency
β˜…β˜†β˜†β˜†2025β†’ Residue 1
View on ClinVar β†—
Related Genes
GDAProtein interaction97%NT5C2Protein interaction97%AK1Protein interaction97%PDE1CProtein interaction96%PDE3AProtein interaction96%PDE6DProtein interaction96%
Tissue Expression6 tissues
Liver
100%
Lung
61%
Bone Marrow
52%
Ovary
44%
Brain
21%
Heart
20%
Gene Interaction Network
Click a node to explore
APRTGDANT5C2AK1PDE1CPDE3APDE6D
PROTEIN STRUCTURE
Preparing viewer…
PDB6FCH Β· 1.45 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.79LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF1.31 [0.95–1.79]
RankingsWhere APRT stands among ~20K protein-coding genes
  • #3,479of 20,598
    Most Researched133 Β· top quartile
  • #960of 5,498
    Most Pathogenic Variants77 Β· top quartile
  • #16,512of 17,882
    Most Constrained (LOEUF)1.79
Genes detectedAPRT
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Management of urinary stones by experts in stone disease (ESD 2025).
PMID: 40583613
Arch Ital Urol Androl Β· 2025
1.00
2
PMID: 22934314
0.90
3
Adenine phosphoribosyltransferase deficiency.
PMID: 22700886
Clin J Am Soc Nephrol Β· 2012
0.80
4
Adenine phosphoribosyl transferase (APRT) deficiency and a novel sequence variant in APRT with phenotypic diversity and a literature review.
PMID: 37619970
Nephrology (Carlton) Β· 2023
0.70
5
Farnesoid X receptor prevents neutrophil extracellular traps via reduced sphingosine-1-phosphate in chronic kidney disease.
PMID: 37823198
Am J Physiol Renal Physiol Β· 2023
0.60