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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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NT5C2
5'-nucleotidase, cytosolic II
Chromosome 10 Β· 10q24.32-q24.33
NCBI Gene: 22978Ensembl: ENSG00000076685.19HGNC: HGNC:8022UniProt: A0A384MED8
125PubMed Papers
21Diseases
0Drugs
31Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein K48-linked ubiquitinationprotein bindingATP binding5'-nucleotidase activityAutosomal recessive spastic paraplegia type 48hereditary spastic paraplegia 45Autosomal recessive spastic paraplegia type 45schizophrenia
✦AI Summary

NT5C2 encodes a cytosolic 5'-nucleotidase that catalyzes dephosphorylation of purine nucleoside monophosphates, particularly IMP and GMP, and possesses phosphotransferase activity to transfer phosphates between nucleosides 12. Through these dual enzymatic activities, NT5C2 regulates intracellular purine nucleotide pools 12. In neural tissue, NT5C2 is enriched during neurodevelopment and regulates AMPK signaling and protein translation in neural progenitor cells, with reduced expression linked to psychiatric risk 3. Clinically, NT5C2 mutations are the primary drivers of thiopurine chemotherapy resistance in relapsed acute lymphoblastic leukemia (ALL), occurring in 17-65% of cases depending on relapse timing 4. Gain-of-function NT5C2 mutations increase nucleosidase activity, reducing active metabolite accumulation of 6-mercaptopurine 5. Alternatively spliced NT5C2 isoforms incorporating exon 6a similarly confer 6-mercaptopurine resistance comparable to hotspot mutations 6. Beyond ALL, NT5C2 genetic variants associate with coronary heart disease risk and intracranial aneurysm susceptibility 78, while elevated NT5C2 expression driven by fatty acid oxidation-induced HIF-1Ξ± activation contributes to hyperuricemia and gout pathogenesis 9. Autosomal recessive NT5C2 mutations cause spastic paraplegia 45.

Sources cited
1
NT5C2 catalyzes dephosphorylation of purine nucleoside 5'-monophosphates and regulates purine nucleotide pools
PMID: 10092873
2
NT5C2 has highest activities for IMP and GMP and regulates purine nucleotide pools
PMID: 12907246
3
NT5C2 is enriched in neural tissue during neurodevelopment and regulates AMPK signaling and protein translation in neural progenitor cells
PMID: 31097295
4
NT5C2 mutations are enriched in relapsed ALL and drive thiopurine resistance in 17-65% of cases depending on relapse timing
PMID: 31697823
5
NT5C2 mutations increase nucleosidase activity and confer chemoresistance to 6-mercaptopurine in relapsed ALL
PMID: 30910786
6
Alternative splicing of NT5C2 producing exon 6a-containing isoforms confers 6-mercaptopurine resistance comparable to hotspot mutations
PMID: 39094066
7
NT5C2 polymorphisms associate with coronary heart disease susceptibility in the Chinese Han population
PMID: 32541135
8
NT5C2 is identified as a potential drug target for intracranial aneurysm with protective effects independent of modifiable risk factors
PMID: 40346920
9
Fatty acid oxidation-induced HIF-1Ξ± activation upregulates NT5C2 to facilitate hepatic urate synthesis in hyperuricemia and gout
PMID: 39872146
10
NT5C2 mutations significantly associate with altered thiopurine sensitivity in ALL cell lines
PMID: 34636169
Disease Associationsβ“˜21
Autosomal recessive spastic paraplegia type 48Open Targets
0.76Strong
hereditary spastic paraplegia 45Open Targets
0.70Moderate
Autosomal recessive spastic paraplegia type 45Open Targets
0.63Moderate
schizophreniaOpen Targets
0.41Moderate
essential hypertensionOpen Targets
0.39Weak
hypertensionOpen Targets
0.38Weak
Intellectual disabilityOpen Targets
0.37Weak
B-cell acute lymphoblastic leukemiaOpen Targets
0.37Weak
bile duct carcinomaOpen Targets
0.37Weak
breast ductal adenocarcinomaOpen Targets
0.37Weak
carcinoma of liver and intrahepatic biliary tractOpen Targets
0.37Weak
colorectal adenocarcinomaOpen Targets
0.37Weak
complex hereditary spastic paraplegiaOpen Targets
0.37Weak
esophageal adenocarcinomaOpen Targets
0.37Weak
Hepatobiliary NeoplasmOpen Targets
0.37Weak
lymphoid neoplasmOpen Targets
0.37Weak
Ovarian Endometrioid Adenocarcinoma with Squamous DifferentiationOpen Targets
0.37Weak
T-cell acute lymphoblastic leukemiaOpen Targets
0.37Weak
type 2 diabetes mellitusOpen Targets
0.36Weak
heart diseaseOpen Targets
0.34Weak
Spastic paraplegia 45, autosomal recessiveUniProt
Pathogenic Variants31
NM_001351169.2(NT5C2):c.1099C>T (p.Arg367Ter)Pathogenic
Hereditary spastic paraplegia 45|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 367
NM_001351169.2(NT5C2):c.115C>T (p.Arg39Ter)Pathogenic
Hereditary spastic paraplegia 45
β˜…β˜…β˜†β˜†2025β†’ Residue 39
NM_001351169.2(NT5C2):c.312_313del (p.Leu105fs)Pathogenic
Hereditary spastic paraplegia 45
β˜…β˜…β˜†β˜†2024β†’ Residue 105
NM_001351169.2(NT5C2):c.1449+2T>CPathogenic
Hereditary spastic paraplegia 45|Neurodevelopmental disorder
β˜…β˜…β˜†β˜†2023
NM_001351169.2(NT5C2):c.503TAG[1] (p.Val169del)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 169
NM_001351169.2(NT5C2):c.516dup (p.Thr173fs)Pathogenic
Hereditary spastic paraplegia 45
β˜…β˜†β˜†β˜†2025β†’ Residue 173
NM_001351169.2(NT5C2):c.1109del (p.Leu370fs)Pathogenic
Hereditary spastic paraplegia 45
β˜…β˜†β˜†β˜†2025β†’ Residue 370
NC_000010.11:g.103091621_103091622insCCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAGAAAAGTGCTAGTTPathogenic
Hereditary spastic paraplegia 45
β˜…β˜†β˜†β˜†2025
NM_001351169.2(NT5C2):c.1456C>A (p.His486Asn)Likely pathogenic
Hereditary spastic paraplegia 45
β˜…β˜†β˜†β˜†2025β†’ Residue 486
NM_001351169.2(NT5C2):c.1153_1154del (p.Lys385fs)Pathogenic
Hereditary spastic paraplegia 45
β˜…β˜†β˜†β˜†2024β†’ Residue 385
NM_001351169.2(NT5C2):c.176-2A>GLikely pathogenic
Hereditary spastic paraplegia 45|Thyroid cancer, nonmedullary, 1
β˜…β˜†β˜†β˜†2024
NM_001351169.2(NT5C2):c.226del (p.Arg76fs)Pathogenic
Hereditary spastic paraplegia 45
β˜…β˜†β˜†β˜†2023β†’ Residue 76
NM_001351169.2(NT5C2):c.675T>G (p.Tyr225Ter)Pathogenic
Hereditary spastic paraplegia 45
β˜…β˜†β˜†β˜†2022β†’ Residue 225
NM_001351169.2(NT5C2):c.771+1G>ALikely pathogenic
Hereditary spastic paraplegia 45
β˜…β˜†β˜†β˜†2022
NM_001351169.2(NT5C2):c.430C>T (p.Arg144Ter)Pathogenic
Hereditary spastic paraplegia 45
β˜…β˜†β˜†β˜†2022β†’ Residue 144
NM_001351169.2(NT5C2):c.1624del (p.Gln542fs)Pathogenic
Hereditary spastic paraplegia 45
β˜…β˜†β˜†β˜†2022β†’ Residue 542
NM_001351169.2(NT5C2):c.1403T>C (p.Leu468Pro)Pathogenic
Hereditary spastic paraplegia 45
β˜…β˜†β˜†β˜†2022β†’ Residue 468
NM_001351169.2(NT5C2):c.595C>T (p.Gln199Ter)Pathogenic
Hereditary spastic paraplegia 45
β˜…β˜†β˜†β˜†2022β†’ Residue 199
NM_001351169.2(NT5C2):c.85C>T (p.Arg29Ter)Pathogenic
Hereditary spastic paraplegia 45|not provided
β˜…β˜†β˜†β˜†2020β†’ Residue 29
NM_001351169.2(NT5C2):c.539+1G>TLikely pathogenic
Hereditary spastic paraplegia 45
β˜…β˜†β˜†β˜†2020
View on ClinVar β†—
Related Genes
NMNAT1Protein interaction99%UPP2Protein interaction98%NMNAT2Protein interaction98%UPRTProtein interaction97%ADAProtein interaction97%ADKProtein interaction97%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
93%
Heart
76%
Lung
73%
Ovary
64%
Liver
38%
Gene Interaction Network
Click a node to explore
NT5C2NMNAT1UPP2NMNAT2UPRTADAADK
PROTEIN STRUCTURE
Preparing viewer…
PDB2JC9 Β· 1.50 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.13LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.81 [0.59–1.13]
RankingsWhere NT5C2 stands among ~20K protein-coding genes
  • #3,773of 20,598
    Most Researched125 Β· top quartile
  • #1,779of 5,498
    Most Pathogenic Variants31
  • #11,659of 17,882
    Most Constrained (LOEUF)1.13
Genes detectedNT5C2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Therapy-induced mutations drive the genomic landscape of relapsed acute lymphoblastic leukemia.
PMID: 31697823
Blood Β· 2020
1.00
2
NT5C2 Gene Polymorphisms and the Risk of Coronary Heart Disease.
PMID: 32541135
Public Health Genomics Β· 2020
0.90
3
Genetics and mechanisms of NT5C2-driven chemotherapy resistance in relapsed ALL.
PMID: 30910786
Blood Β· 2019
0.80
4
The Psychiatric Risk Gene NT5C2 Regulates Adenosine Monophosphate-Activated Protein Kinase Signaling and Protein Translation in Human Neural Progenitor Cells.
PMID: 31097295
Biol Psychiatry Β· 2019
0.70
5
An Alternatively Spliced Gain-of-Function NT5C2 Isoform Contributes to Chemoresistance in Acute Lymphoblastic Leukemia.
PMID: 39094066
Cancer Res Β· 2024
0.60