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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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ARFGAP3
ARF GTPase activating protein 3
Chromosome 22 · 22q13.2
NCBI Gene: 26286Ensembl: ENSG00000242247.12HGNC: HGNC:661UniProt: Q9NP61
68PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
cytosolmembraneGTPase activator activityprotein bindingStress urinary incontinencebenign soft tissue neoplasmprimary ovarian insufficiencyCOVID-19
✦AI Summary

ARFGAP3 is a GTPase-activating protein that regulates ADP-ribosylation factor 1 (ARF1) activity to control intracellular vesicular trafficking and protein transport 1. As a GAP for ARF1, ARFGAP3 catalyzes GTP hydrolysis on ARF1, facilitating dissociation of coatomer from Golgi-derived membranes and enabling membrane fusion 1. ARFGAP3 localizes to the trans-Golgi network, early endosomes, and perinuclear regions, where it plays essential roles in COPI coat assembly and cargo sorting 23. Its GAP activity is regulated by phospholipids and requires interaction with coatomer for catalytic function 14. Beyond canonical secretory pathway functions, ARFGAP3 regulates post-Golgi transport of the cation-independent mannose 6-phosphate receptor and endosomal trafficking through GGA adaptor protein regulation 3. ARFGAP3 also functions in Golgi-to-ER retrograde transport through overlapping roles with ARFGAP1 and ARFGAP2 5. Clinically, ARFGAP3 is an androgen-regulated gene that promotes prostate cancer cell proliferation and migration via paxillin interaction 6. Recent evidence reveals ARFGAP3 protects against skeletal muscle aging by promoting autophagy and mitochondrial function through Rab5a-mediated signaling pathways, identifying it as a potential therapeutic target for age-related muscle decline 7.

Sources cited
1
ARFGAP3 is a GAP for ARF1 with phospholipid-regulated activity; it localizes to perinuclear regions and inhibits early secretory pathway when overexpressed
PMID: 11172815
2
ARFGAP2 and ARFGAP3 are essential for COPI coat assembly and lattice formation on Golgi membranes in living cells
PMID: 20858901
3
ArfGAP3 localizes to trans-Golgi network and early endosomes; regulates CIMPR transport and endosomal trafficking through GGA adaptor interaction
PMID: 24076238
4
ArfGAP3 Golgi localization depends on basic stretch and carboxy-amphipathic motif; basic stretch interacts with coatomer and is essential for catalytic activity
PMID: 19109418
5
ArfGAP1, ArfGAP2, and ArfGAP3 have overlapping roles in regulating COPI function and Golgi-to-ER retrograde transport
PMID: 19299515
6
ARFGAP3 is an androgen-regulated gene that promotes prostate cancer cell proliferation and migration via paxillin interaction
PMID: 21647875
7
ArfGAP3 protects mitochondrial function and promotes autophagy through Rab5a signaling in aging skeletal muscle; regulates IRS1-AKT-mTOR pathways
PMID: 39961359
Disease Associationsⓘ20
Stress urinary incontinenceOpen Targets
0.28Weak
benign soft tissue neoplasmOpen Targets
0.20Weak
primary ovarian insufficiencyOpen Targets
0.12Weak
COVID-19Open Targets
0.03Suggestive
pelvic organ prolapseOpen Targets
0.03Suggestive
ulcerative colitisOpen Targets
0.02Suggestive
sessile serrated polypOpen Targets
0.01Suggestive
prostate cancerOpen Targets
0.01Suggestive
Colon Sessile Serrated Adenoma/PolypOpen Targets
0.01Suggestive
ovarian carcinomaOpen Targets
0.01Suggestive
Crohn's diseaseOpen Targets
0.01Suggestive
Alzheimer diseaseOpen Targets
0.00Suggestive
adrenal cortex carcinomaOpen Targets
0.00Suggestive
invasive breast ductal carcinomaOpen Targets
0.00Suggestive
pachyonychia congenitaOpen Targets
0.00Suggestive
squamous cell carcinomaOpen Targets
0.00Suggestive
dermatomyositisOpen Targets
0.00Suggestive
diabetes mellitusOpen Targets
0.00Suggestive
cancerOpen Targets
0.00Suggestive
systemic lupus erythematosusOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
COPG2Protein interaction100%ARCN1Protein interaction96%ARF1Protein interaction96%COPG1Protein interaction96%ARFGAP1Protein interaction80%ARL4DShared pathway75%
Tissue Expression6 tissues
Liver
100%
Lung
81%
Brain
75%
Bone Marrow
69%
Heart
61%
Ovary
47%
Gene Interaction Network
Click a node to explore
ARFGAP3COPG2ARCN1ARF1COPG1ARFGAP1ARL4D
PROTEIN STRUCTURE
Preparing viewer…
PDB2CRW · NMR
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.12LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.89 [0.71–1.12]
RankingsWhere ARFGAP3 stands among ~20K protein-coding genes
  • #6,876of 20,598
    Most Researched68
  • #11,469of 17,882
    Most Constrained (LOEUF)1.12
Genes detectedARFGAP3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
ArfGAP3 Protects Mitochondrial Function and Promotes Autophagy Through Rab5a-Mediated Signals in Ageing Skeletal Muscle.
PMID: 39961359
J Cachexia Sarcopenia Muscle · 2025
1.00
2
ARFGAP3, an androgen target gene, promotes prostate cancer cell proliferation and migration.
PMID: 21647875
Int J Cancer · 2012
0.90
3
Functional characterization of novel human ARFGAP3.
PMID: 11172815
FEBS Lett · 2001
0.80
4
ARFGAP2 and ARFGAP3 are essential for COPI coat assembly on the Golgi membrane of living cells.
PMID: 20858901
J Biol Chem · 2010
0.70
5
ArfGAP3 regulates the transport of cation-independent mannose 6-phosphate receptor in the post-Golgi compartment.
PMID: 24076238
Curr Biol · 2013
0.60