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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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ARPC3
actin related protein 2/3 complex subunit 3
Chromosome 12 · 12q24.11
NCBI Gene: 10094Ensembl: ENSG00000111229.17HGNC: HGNC:706UniProt: O15145
132PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
focal adhesionmembraneprotein bindingArp2/3 complex-mediated actin nucleationneurodegenerative diseasecutaneous Leishmaniasisneuroinflammatory disorderAlzheimer disease
✦AI Summary

ARPC3 is a core structural component of the Arp2/3 complex, a multiprotein machinery essential for actin filament nucleation and branching 1. The complex mediates branched actin network formation in the cytoplasm, providing force for cell motility, and also localizes to the nucleus where it regulates gene transcription and DNA repair 2. Nuclear Arp2/3 complex promotes homologous recombination by facilitating actin polymerization that drives double-strand break motility 2. ARPC3 activation requires nucleation-promoting factors like SPIN90, which dimerizes to engage the Arp2/3 clamp and ARPC3 interface, inducing conformational changes necessary for actin nucleation 3. Clinically, ARPC3 associations span multiple pathologies: rare disease analysis identified ARPC3 variants linked to Charcot-Marie-Tooth disease 4, while dysregulated ARPC3 expression correlates with cancer progression. In breast cancer, elevated ARPC3 promotes metastatic potential through F-actin reorganization and epithelial-mesenchymal transition, though therapeutic inhibition reduces metastasis 5. ARPC3 has been identified as a diagnostic biomarker in osteosarcoma 6 and chr12 obstructive pulmonary disease 7. A CpG-SNP in the ARPC3 promoter associates with hypertriglyceridemia in obese patients 8, highlighting metabolic regulatory functions beyond cytoskeletal control.

Sources cited
1
ARPC3 is a component of the Arp2/3 complex that mediates actin polymerization and branched actin network formation for cell motility
PMID: 9230079
2
Arp2/3 complex promotes nuclear actin polymerization regulating gene transcription, DNA repair, and homologous recombination by driving DSB motility
PMID: 29925947
3
SPIN90 dimer activation of Arp2/3 complex involves engagement with Arp2/3 clamp and ARPC3 interface to induce conformational changes for actin nucleation
PMID: 40954370
4
ARPC3 variants are associated with Charcot-Marie-Tooth disease as a rare disease-gene association
PMID: 40011789
5
ARPC3 downregulation inhibits breast cancer cell proliferation, migration, invasion, and lung metastasis through modulation of F-actin structure and EMT inhibition
PMID: 40446975
6
ARPC3 is one of six core exosome-associated genes identified as potential biomarkers in osteosarcoma
PMID: 40616392
7
ARPC3 is identified as a feature gene associated with COPD-specific macrophage subpopulations and could serve as a diagnostic marker
PMID: 40244418
8
A CpG-SNP in the ARPC3 promoter is associated with hypertriglyceridemia in severely obese patients through epigenetic-mediated mechanisms affecting lipid metabolism
PMID: 27055012
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.55Moderate
cutaneous LeishmaniasisOpen Targets
0.37Weak
neuroinflammatory disorderOpen Targets
0.37Weak
Alzheimer diseaseOpen Targets
0.26Weak
Parkinson diseaseOpen Targets
0.26Weak
lysosomal storage diseaseOpen Targets
0.26Weak
multiple sclerosisOpen Targets
0.26Weak
schizophreniaOpen Targets
0.12Weak
obesityOpen Targets
0.12Weak
Abnormality of the skeletal systemOpen Targets
0.08Suggestive
HeadacheOpen Targets
0.08Suggestive
PainOpen Targets
0.07Suggestive
intelligenceOpen Targets
0.06Suggestive
poisoningOpen Targets
0.03Suggestive
atrial fibrillationOpen Targets
0.03Suggestive
hepatocellular carcinomaOpen Targets
0.03Suggestive
neoplasmOpen Targets
0.02Suggestive
metabolic syndromeOpen Targets
0.01Suggestive
mastitisOpen Targets
0.01Suggestive
Myocardial IschemiaOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CDC42Protein interaction100%WIPF2Protein interaction100%CTTNProtein interaction100%ACTR2Protein interaction100%ACTA1Protein interaction100%ACTBProtein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
75%
Brain
50%
Liver
45%
Heart
31%
Ovary
27%
Gene Interaction Network
Click a node to explore
ARPC3CDC42WIPF2CTTNACTR2ACTA1ACTB
PROTEIN STRUCTURE
Preparing viewer…
PDB9I2B · 3.00 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.68LoF Tolerant
pLIⓘ
0.71Intermediate
Observed/Expected LoF0.32 [0.17–0.68]
RankingsWhere ARPC3 stands among ~20K protein-coding genes
  • #3,511of 20,598
    Most Researched132 · top quartile
  • #5,030of 17,882
    Most Constrained (LOEUF)0.68
Genes detectedARPC3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Rare disease gene association discovery in the 100,000 Genomes Project.
PMID: 40011789
Nature · 2025
1.00
2
Compound kushen injection inhibits breast cancer lung metastasis through regulating MTSS1/ARPC3/F-actin.
PMID: 40446975
J Ethnopharmacol · 2025
0.90
3
Exosomal Gene Biomarkers in Osteosarcoma: Mifepristone as a Targeted Therapeutic Revealed by Multi-Omics Analysis.
PMID: 40616392
FASEB J · 2025
0.80
4
Activation of Arp2/3 complex by a SPIN90 dimer in linear actin-filament nucleation.
PMID: 40954370
Nat Struct Mol Biol · 2025
0.70
5
Nuclear translocation of cGAS orchestrates VEGF-A-mediated angiogenesis.
PMID: 37027305
Cell Rep · 2023
0.60