HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
ATF6B
activating transcription factor 6 beta
Chromosome 6 · 6p21.32
NCBI Gene: 1388Ensembl: ENSG00000168468.12HGNC: HGNC:2349UniProt: A0A1U9X796
50PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
RNA polymerase II cis-regulatory region sequence-specific DNA bindingDNA-binding transcription activator activity, RNA polymerase II-specifictranscription cis-regulatory region bindingDNA-binding transcription factor activity
✦AI Summary

ATF6B is a transcription factor that acts in the unfolded protein response (UPR) pathway by activating UPR target genes during endoplasmic reticulum (ER) stress 1. It binds DNA at the 5'-CCAC[GA]-3' half of the ER stress response element (ERSE) when NF-Y is bound to the full ERSE sequence 1. In the central nervous system, ATF6β specifically regulates calreticulin expression, an ER molecular chaperone with high calcium-binding capacity that promotes neuronal survival under ER stress and excitotoxicity 2. ATF6β deficiency decreases calreticulin expression and increases anxiety-like behavior and hyperactivity through elevated corticotropin-releasing hormone signaling in emotional brain regions 3. Disease relevance includes identification as a prognostic marker in colon cancer, where ATF6B is implicated in ER stress-related pathways affecting tumor survival and immune responses 4. ATF6B also appears involved in autoimmune disease pathogenesis, with knockdown affecting B cell maturation and immunoglobulin production in systemic lupus erythematosus models 5. Clinically, CRISPR-Cas9-mediated C-terminal deletion of ATF6B enhances membrane protein production in engineered cells by modulating UPR pathway capacity 6, suggesting therapeutic potential for biotechnology applications.

Sources cited
1
ATF6B activates UPR target genes during ER stress and binds the ERSE DNA sequence
PMID: 11256944
2
ATF6β regulates calreticulin expression and promotes neuronal survival under ER stress and excitotoxicity
PMID: 34158584
3
ATF6β deficiency causes anxiety-like behavior and hyperactivity via CRH signaling in brain emotional centers
PMID: 36853481
4
ATF6B is identified as an ER stress-related gene with prognostic significance in colon cancer
PMID: 40169935
5
ATF6B knockdown affects B cell maturation and IgG production in systemic lupus erythematosus models
PMID: 40934967
6
CRISPR-mediated ATF6B C-terminal deletion enhances membrane protein production in HEK293T cells
PMID: 40281769
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
HSPA5Protein interaction98%EDEM1Protein interaction98%CREB3Protein interaction96%CREB3L2Protein interaction94%ATF1Protein interaction93%ATF4Protein interaction93%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
Click a node to explore
ATF6BHSPA5EDEM1CREB3CREB3L2ATF1ATF4
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q6AZW6
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.75LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.59 [0.47–0.75]
RankingsWhere ATF6B stands among ~20K protein-coding genes
  • #8,772of 20,598
    Most Researched50
  • #5,970of 17,882
    Most Constrained (LOEUF)0.75
Genes detectedATF6B
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Identification of endoplasmic reticulum stress-related genes as prognostic markers in colon cancer.
PMID: 40169935
Cancer Biol Ther · 2025
1.00
2
Polymorphism in the 3'-UTR of LIF but Not in the ATF6B Gene Associates with Schizophrenia Susceptibility: a Case-Control Study and In Silico Analyses.
PMID: 32504404
J Mol Neurosci · 2020
0.90
3
ATF6β Deficiency Elicits Anxiety-like Behavior and Hyperactivity Under Stress Conditions.
PMID: 36853481
Neurochem Res · 2023
0.80
4
CRISPR-Cas9-Mediated ATF6B Gene Editing Enhances Membrane Protein Production in HEK293T Cells.
PMID: 40281769
Bioengineering (Basel) · 2025
0.70
5
Genetic associations in ankylosing spondylitis: circulating proteins as drug targets and biomarkers.
PMID: 38835753
Front Immunol · 2024
0.60