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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
ATG12
autophagy related 12
Chromosome 5 Β· 5q22.3
NCBI Gene: 9140Ensembl: ENSG00000145782.14HGNC: HGNC:588UniProt: O94817
100PubMed Papers
20Diseases
0Drugs
4Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
positive regulation of viral translationprotein bindingregulation of autophagosome maturationnegative regulation of defense response to virusneurodegenerative diseaseneoplasmhepatocellular carcinomacolorectal carcinoma
✦AI Summary

ATG12 is a core autophagy-related protein essential for autophagosome formation and cellular homeostasis. Functionally, ATG12 operates as part of the ATG12-ATG5-ATG16L1 conjugate complex, which acts as an E3-like ubiquitin ligase that catalyzes lipidation of LC3 (microtubule-associated protein 1 light chain 3), a critical step in autophagosome biogenesis 1. This complex facilitates phagophore expansion, maturation, and subsequent autophagosome-lysosome fusion 1. ATG12 also functions through interaction with ATG3 to regulate basal autophagy and late endosome trafficking, including exosome secretion and viral budding 2. Beyond canonical autophagy, ATG12 exhibits immune-modulatory roles: it negatively regulates antiviral innate immunity by impairing type I interferon production during VSV infection and is required for hepatitis C virus RNA translation and replication initiation [UniProt/PubMed:17709747, 19666601]. Clinically, ATG12 dysregulation is implicated in Parkinson's disease; functional promoter variants that alter ATG12 transcription have been identified in sporadic PD patients, suggesting impaired autophagy contributes to neurodegeneration 3. Additionally, ATG12 upregulation in pancreatic Ξ²-cells under glucocorticoid receptor activation promotes excessive autophagy during glucolipotoxicity, contributing to diabetes pathogenesis 4. These findings establish ATG12 as a multifunctional regulator bridging autophagy, immunity, and metabolic disease.

Sources cited
1
ATG12-ATG5-ATG16L1 complex functions as E3-ligase for LC3 lipidation and autophagosome maturation
PMID: 40221132
2
ATG12-ATG3 conjugate regulates basal autophagy, late endosome function, exosome secretion, and viral budding
PMID: 25998418
3
Functional ATG12 promoter variants identified in sporadic Parkinson's disease patients alter transcriptional activity
PMID: 28229934
4
ATG12 upregulation via NR3C1-FTO-m6A axis promotes excessive autophagy in pancreatic Ξ²-cells leading to diabetes
PMID: 37039556
⚠Limited data available β€” This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜20
neurodegenerative diseaseOpen Targets
0.53Moderate
neoplasmOpen Targets
0.09Suggestive
hepatocellular carcinomaOpen Targets
0.09Suggestive
colorectal carcinomaOpen Targets
0.09Suggestive
breast cancerOpen Targets
0.09Suggestive
head and neck squamous cell carcinomaOpen Targets
0.08Suggestive
melanomaOpen Targets
0.08Suggestive
renal cell carcinomaOpen Targets
0.07Suggestive
oral squamous cell carcinomaOpen Targets
0.05Suggestive
familial primary pulmonary hypoplasiaOpen Targets
0.05Suggestive
frozen shoulderOpen Targets
0.05Suggestive
gastric cancerOpen Targets
0.05Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.04Suggestive
cancerOpen Targets
0.04Suggestive
Alzheimer diseaseOpen Targets
0.04Suggestive
spondylolisthesisOpen Targets
0.03Suggestive
non-small cell lung carcinomaOpen Targets
0.03Suggestive
cervical cancerOpen Targets
0.03Suggestive
osteosarcomaOpen Targets
0.03Suggestive
type 1 diabetes mellitusOpen Targets
0.02Suggestive
Pathogenic Variants4
NM_004707.4(ATG12):c.363+3A>TLikely pathogenic
Colon adenocarcinoma|Uveal melanoma|Mitochondrial disease
β˜…β˜†β˜†β˜†2026
NM_004707.4(ATG12):c.413C>T (p.Ala138Val)Likely pathogenic
Mitochondrial disease
β˜…β˜†β˜†β˜†2026β†’ Residue 138
NM_004707.4(ATG12):c.235C>T (p.Arg79Ter)Likely pathogenic
Mitochondrial disease
β˜…β˜†β˜†β˜†2026β†’ Residue 79
NM_004707.4(ATG12):c.324T>G (p.Phe108Leu)Likely pathogenic
Mitochondrial disease
β˜…β˜†β˜†β˜†2026β†’ Residue 108
View on ClinVar β†—
Related Genes
BNIP3Protein interaction100%BNIP3LProtein interaction100%MAP1AProtein interaction100%MAP1BProtein interaction100%SQSTM1Protein interaction100%ULK2Protein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
96%
Liver
93%
Brain
88%
Lung
84%
Heart
73%
Gene Interaction Network
Click a node to explore
ATG12BNIP3BNIP3LMAP1AMAP1BSQSTM1ULK2
PROTEIN STRUCTURE
Preparing viewer…
PDB4NAW Β· 2.20 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.67LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF1.15 [0.80–1.67]
RankingsWhere ATG12 stands among ~20K protein-coding genes
  • #4,764of 20,598
    Most Researched100 Β· top quartile
  • #3,742of 5,498
    Most Pathogenic Variants4
  • #15,984of 17,882
    Most Constrained (LOEUF)1.67
Genes detectedATG12
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
ZDHHC7-mediated
PMID: 39087410
Autophagy Β· 2024
1.00
2
NR3C1/Glucocorticoid receptor activation promotes pancreatic Ξ²-cell autophagy overload in response to glucolipotoxicity.
PMID: 37039556
Autophagy Β· 2023
0.90
3
Autophagy basics.
PMID: 21175768
Microbiol Immunol Β· 2011
0.80
4
The Role of WIPI2, ATG16L1 and ATG12-ATG5 in Selective and Nonselective Autophagy.
PMID: 40221132
J Mol Biol Β· 2025
0.70
5
Mechanisms of Autophagy.
PMID: 25747593
Annu Rev Biophys Β· 2015
0.60