HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
ATG3
autophagy related 3
Chromosome 3 · 3q13.2
NCBI Gene: 64422Ensembl: ENSG00000144848.12HGNC: HGNC:20962UniProt: Q9NT62
89PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub GeneTransporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingubiquitin-like protein transferase activityenzyme bindingAtg8-family conjugating enzyme activityneurodegenerative diseaselysosomal storage diseaseacute myeloid leukemiacervical cancer
✦AI Summary

ATG3 is an E2-conjugating enzyme essential for autophagosome formation through its catalysis of ATG8-like protein (LC3/GABARAP) lipidation to phosphatidylethanolamine on membranes 1. ATG3 cycles between binding to the E1 enzyme ATG7 for substrate loading and the E3 complex (ATG12-ATG5-ATG16L1) to promote lipidation 2. Functionally, ATG3-mediated LC3 lipidation is regulated by ATG7 acetylation status, with deacetylation of ATG7 enhancing ATG3 interaction and activating macroautophagy and LC3-associated microautophagy 3. Beyond canonical autophagy, ATG3 regulates lipid metabolism independent of autophagic flux—hepatic ATG3 inhibition ameliorates non-alcoholic fatty liver disease by increasing mitochondrial function through SIRT1 and CPT1a pathways 4. ATG3 also contributes to ferroptotic cell death through autophagy-dependent mechanisms 5 and influences cancer cell resistance to CAR-T immunotherapy, with elevated ATG3 correlating with poor treatment response in B-cell malignancies 6. Additionally, ATG3 mediates impaired lipophagy in diabetes-associated cognitive impairment microglia 7 and regulates autophagy-dependent granulosa cell function in polycystic ovary syndrome 8. These findings establish ATG3 as a multifunctional protein with roles extending beyond canonical autophagy to lipid homeostasis, cell death, and immune responses.

Sources cited
1
ATG3 catalyzes covalent conjugation of ATG8-like proteins to phosphatidylethanolamine during autophagosome formation
PMID: 24191030
2
ATG3 cycles between ATG7 and the ATG12-ATG5-ATG16L1 E3 complex during lipidation reactions
PMID: 11825910
3
ATG7 acetylation disrupts interaction with ATG3 and controls LC3 lipidation and macroautophagy induction
PMID: 37999993
4
ATG3 inhibition ameliorates hepatic steatosis by increasing mitochondrial function through SIRT1 and CPT1a, independent of autophagy
PMID: 34555423
5
ATG3 contributes to ferroptotic cell death through autophagy-dependent mechanisms
PMID: 30880243
6
Higher ATG3 expression in B-cell malignancies correlates with resistance to CAR-T immunotherapy and poorer survival outcomes
PMID: 38407943
7
ATG3 is involved in impaired lipophagy in microglia contributing to diabetes-associated cognitive impairment
PMID: 37204119
8
ATG3 regulates autophagy and granulosa cell function in polycystic ovary syndrome
PMID: 36752638
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.56Moderate
lysosomal storage diseaseOpen Targets
0.29Weak
acute myeloid leukemiaOpen Targets
0.08Suggestive
cervical cancerOpen Targets
0.07Suggestive
non-small cell lung carcinomaOpen Targets
0.07Suggestive
hepatocellular carcinomaOpen Targets
0.05Suggestive
nasopharyngeal carcinomaOpen Targets
0.05Suggestive
infectionOpen Targets
0.05Suggestive
viral diseaseOpen Targets
0.04Suggestive
Reunion island Larsen syndromeOpen Targets
0.03Suggestive
Reunion Island's Larsen syndromeOpen Targets
0.03Suggestive
leukemiaOpen Targets
0.03Suggestive
neoplasmOpen Targets
0.03Suggestive
myelodysplastic syndromeOpen Targets
0.02Suggestive
Townes-Brocks syndromeOpen Targets
0.02Suggestive
precursor B-cell acute lymphoblastic leukemiaOpen Targets
0.02Suggestive
subarachnoid hemorrhageOpen Targets
0.02Suggestive
ovarian cancerOpen Targets
0.02Suggestive
pachyonychia congenitaOpen Targets
0.02Suggestive
cervical carcinomaOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
MAP1AProtein interaction100%MAP1BProtein interaction100%MAP1SProtein interaction100%ATG4AProtein interaction100%CFLARProtein interaction100%ATG4DProtein interaction99%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
60%
Heart
41%
Lung
38%
Liver
32%
Ovary
26%
Gene Interaction Network
Click a node to explore
ATG3MAP1AMAP1BMAP1SATG4ACFLARATG4D
PROTEIN STRUCTURE
Preparing viewer…
PDB4NAW · 2.20 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.89LoF Tolerant
pLIⓘ
0.01Tolerant
Observed/Expected LoF0.56 [0.36–0.89]
RankingsWhere ATG3 stands among ~20K protein-coding genes
  • #5,349of 20,598
    Most Researched89
  • #7,921of 17,882
    Most Constrained (LOEUF)0.89
Genes detectedATG3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Impaired lipophagy induced-microglial lipid droplets accumulation contributes to the buildup of TREM1 in diabetes-associated cognitive impairment.
PMID: 37204119
Autophagy · 2023
1.00
2
Ferroptosis is a type of autophagy-dependent cell death.
PMID: 30880243
Semin Cancer Biol · 2020
0.90
3
Autophagy in the physiological endometrium and cancer.
PMID: 32401642
Autophagy · 2021
0.80
4
Ferredoxin 1 regulates granulosa cell apoptosis and autophagy in polycystic ovary syndrome.
PMID: 36752638
Clin Sci (Lond) · 2023
0.70
5
Targeting autophagy overcomes cancer-intrinsic resistance to CAR-T immunotherapy in B-cell malignancies.
PMID: 38407943
Cancer Commun (Lond) · 2024
0.60