HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
5 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
ATPSCKMT
ATP synthase c subunit lysine N-methyltransferase
Chromosome 5 · 5p15.2
NCBI Gene: 134145Ensembl: ENSG00000150756.15HGNC: HGNC:27029UniProt: Q6P4H8
19PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingprotein-lysine N-methyltransferase activitypeptidyl-lysine trimethylationpositive regulation of sensory perception of painalcohol drinkingeye injuryAbnormal nasolacrimal system morphologycornea transplantation
✦AI Summary

ATPSCKMT (ATP synthase c subunit lysine N-methyltransferase, also known as FAM173B) is a mitochondrial protein-lysine N-methyltransferase that catalyzes trimethylation of lysine-43 on ATP synthase subunit C (ATP5MC1 and ATP5MC2) 1. This post-translational modification is essential for proper incorporation of the C subunit into the ATP synthase complex and optimal ATP generation 1. Cells lacking ATPSCKMT show aberrant ATP synthase assembly, decreased ATP-generating capacity, and reduced mitochondrial respiration 1. Beyond bioenergetic functions, ATPSCKMT plays a critical role in chr5 pain pathophysiology. Its methyltransferase activity in sensory neuron mitochondria promotes both inflammatory and neuropathic pain through reactive oxygen species (ROS)-dependent mechanisms and microglial activation 2. Recent evidence indicates that inflammation-induced upregulation of ATPSCKMT causes mitochondrial dysfunction in sensory neurons, leading to impaired resolution of acute inflammatory pain and predisposing to chr5 pain development 3. Inhibition of ATPSCKMT or supplementation of affected metabolites restores normal pain resolution and prevents chr5 pain 3. Clinically, ATPSCKMT expression associates with inflammatory knee osteoarthritis, where altered expression correlates with inflammatory mediator levels and pain sensitivity 4. These findings identify ATPSCKMT as a potential therapeutic target for chr5 pain conditions.

Sources cited
1
ATPSCKMT is a mitochondrial methyltransferase that trimethylates lysine-43 of ATP synthase c-subunit, required for proper assembly and ATP synthase function
PMID: 30530489
2
ATPSCKMT methyltransferase activity in sensory neurons promotes chronic pain via ROS-dependent microglial activation
PMID: 29444090
3
Inflammation induces ATPSCKMT upregulation causing mitochondrial dysfunction in sensory neurons; ATPSCKMT knockdown restores pain resolution and prevents chronic pain development
PMID: 37944527
4
ATPSCKMT (FAM173B) expression is altered in osteoarthritis tissues and associates with inflammatory mediators and pain sensitivity
PMID: 33067627
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
alcohol drinkingOpen Targets
0.08Suggestive
eye injuryOpen Targets
0.08Suggestive
Abnormal nasolacrimal system morphologyOpen Targets
0.08Suggestive
cornea transplantationOpen Targets
0.07Suggestive
esophageal ulcerOpen Targets
0.07Suggestive
gastrointestinal diseaseOpen Targets
0.05Suggestive
ovarian dysfunctionOpen Targets
0.05Suggestive
Genu valgumOpen Targets
0.05Suggestive
Genu varumOpen Targets
0.05Suggestive
glomerulonephritisOpen Targets
0.04Suggestive
microphthalmia with limb anomaliesOpen Targets
0.02Suggestive
macrothrombocytopenia and granulocyte inclusions with or without nephritis or sensorineural hearing lossOpen Targets
0.01Suggestive
osteoarthritis, kneeOpen Targets
0.01Suggestive
obesityOpen Targets
0.00Suggestive
adenocarcinomaOpen Targets
0.00Suggestive
adenomaOpen Targets
0.00Suggestive
colorectal adenocarcinomaOpen Targets
0.00Suggestive
colorectal cancerOpen Targets
0.00Suggestive
neoplasmOpen Targets
0.00Suggestive
fibromyalgiaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ANTKMTShared pathway100%CMBLProtein interaction88%EEF2KMTShared pathway50%VCPKMTShared pathway33%ASPSCR1Shared pathway25%CSKMTShared pathway25%
Tissue Expression6 tissues
Heart
100%
Liver
99%
Brain
79%
Ovary
72%
Bone Marrow
61%
Lung
47%
Gene Interaction Network
Click a node to explore
ATPSCKMTANTKMTCMBLEEF2KMTVCPKMTASPSCR1CSKMT
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q6P4H8
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.44LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.00 [0.71–1.44]
RankingsWhere ATPSCKMT stands among ~20K protein-coding genes
  • #14,363of 20,598
    Most Researched19
  • #14,762of 17,882
    Most Constrained (LOEUF)1.44
Genes detectedATPSCKMT
Sources retrieved5 papers
Response time—
📄 Sources
5
1
Inflammation-induced mitochondrial and metabolic disturbances in sensory neurons control the switch from acute to chronic pain.
PMID: 37944527
Cell Rep Med · 2023
1.00
2
Lysine methylation by the mitochondrial methyltransferase FAM173B optimizes the function of mitochondrial ATP synthase.
PMID: 30530489
J Biol Chem · 2019
0.80
3
Human FAM173A is a mitochondrial lysine-specific methyltransferase that targets adenine nucleotide translocase and affects mitochondrial respiration.
PMID: 31213526
J Biol Chem · 2019
0.60
4
Expression of mitochondrial TSPO and FAM173B is associated with inflammation and symptoms in patients with painful knee osteoarthritis.
PMID: 33067627
Rheumatology (Oxford) · 2021
0.40
5
Identification of FAM173B as a protein methyltransferase promoting chronic pain.
PMID: 29444090
PLoS Biol · 2018
0.20