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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
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B3GALNT2
beta-1,3-N-acetylgalactosaminyltransferase 2
Chromosome 1 Β· 1q42.3
NCBI Gene: 148789Ensembl: ENSG00000162885.15HGNC: HGNC:28596UniProt: Q8NCR0
33PubMed Papers
21Diseases
0Drugs
60Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingacetylgalactosaminyltransferase activityprotein O-linked glycosylationglycoprotein biosynthetic processmuscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11congenital muscular dystrophygenetic disordermuscular dystrophy-dystroglycanopathy, type A
✦AI Summary

B3GALNT2 encodes a beta-1,3-N-acetylgalactosaminyltransferase that synthesizes the GalNAc-beta-1-3GlcNAc carbohydrate structure on N- and O-glycans, functioning as a glycosyltransferase without galactose or galactosaminyl transferase activity toward other substrates 1. The enzyme acts coordinately with GTDC2/POMGnT2 in the endoplasmic reticulum to modify alpha-dystroglycan (Ξ±-DG) by synthesizing a phosphorylated O-mannosyl trisaccharide essential for binding laminin G-like domain-containing extracellular proteins with high affinity 1. Loss of B3GALNT2 function severely reduces Ξ±-DG glycosylation and abolishes laminin binding despite partial residual enzymatic activity, supporting a critical functional threshold model 2. B3GALNT2 mutations cause alpha-dystroglycanopathy (Ξ±-DGP), a rare congenital muscular dystrophy characterized by variable severity ranging from limb girdle muscular dystrophy to Walker-Warburg syndrome with brain malformations, developmental delay, eye abnormalities, and congenital hydrocephalus 3456. Pathogenic variants include truncating mutations causing complete protein loss and missense mutations impairing enzymatic activity to 40-50% of wild-type levels 2. Clinical phenotypes encompass muscle-eye-brain disease, West syndrome, and sensorineural hearing loss, with genotype-phenotype correlations emerging from expanding case reports 6.

Sources cited
1
B3GALNT2 is localized to the endoplasmic reticulum and functions as a glycosyltransferase in the sequential modification of alpha-dystroglycan O-glycans
PMID: 40324206
2
B3GALNT2 mutations cause alpha-dystroglycanopathy with compound heterozygous variants; missense mutations impair enzymatic activity to 40-50% of wild-type levels while truncating mutations cause complete protein loss; a functional threshold effect explains severe Ξ±-DG glycosylation defects despite partial residual activity
PMID: 40665687
3
B3GALNT2 mutations are among the genes causing dystroglycanopathy in Chinese patients, contributing to the genetic spectrum of congenital muscular dystrophies
PMID: 33200426
4
B3GALNT2 was recently discovered to cause congenital muscular dystrophy; 15 UK patients carried mutations in ISPD, GMPPB and B3GALNT2 genes
PMID: 28688748
5
B3GALNT2 compound heterozygous mutations cause Walker-Warburg syndrome with congenital hydrocephalus, expanding the spectrum of pathogenic mutations
PMID: 35338537
6
B3GALNT2 mutations cause dystroglycanopathy with variable severity including muscle-eye-brain disease, Walker-Warburg syndrome, West syndrome, and sensorineural hearing loss
PMID: 29791932
Disease Associationsβ“˜21
muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11Open Targets
0.83Strong
congenital muscular dystrophyOpen Targets
0.51Moderate
genetic disorderOpen Targets
0.38Weak
muscular dystrophy-dystroglycanopathy, type AOpen Targets
0.37Weak
muscle-eye-brain diseaseOpen Targets
0.37Weak
autosomal recessive non-syndromic intellectual disabilityOpen Targets
0.37Weak
muscular dystrophy-dystroglycanopathyOpen Targets
0.34Weak
parasitic infectionOpen Targets
0.26Weak
HemoptysisOpen Targets
0.23Weak
Abnormal sputumOpen Targets
0.22Weak
type 2 diabetes mellitusOpen Targets
0.21Weak
hypoparathyroidism-retardation-dysmorphism syndromeOpen Targets
0.18Weak
autosomal recessive Kenny-Caffey syndromeOpen Targets
0.15Weak
encephalopathy, progressive, with amyotrophy and optic atrophyOpen Targets
0.15Weak
neoplasmOpen Targets
0.07Suggestive
hepatocellular carcinomaOpen Targets
0.07Suggestive
psoriasis vulgarisOpen Targets
0.07Suggestive
Gorham-Stout diseaseOpen Targets
0.07Suggestive
bone benign neoplasmOpen Targets
0.05Suggestive
benign chondrogenic neoplasmOpen Targets
0.04Suggestive
Muscular dystrophy-dystroglycanopathy congenital with brain and eye anomalies A11UniProt
Pathogenic Variants60
NM_152490.5(B3GALNT2):c.762+1G>ALikely pathogenic
Inborn genetic diseases|Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11|not provided
β˜…β˜…β˜†β˜†2026
NM_152490.5(B3GALNT2):c.770dup (p.Ala259fs)Pathogenic
not provided|Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11
β˜…β˜…β˜†β˜†2025β†’ Residue 259
NM_152490.5(B3GALNT2):c.824_825dup (p.Ile276fs)Pathogenic
not provided|Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11|B3GALNT2-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 276
NM_152490.5(B3GALNT2):c.979G>A (p.Asp327Asn)Pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 327
NM_152490.5(B3GALNT2):c.1275_1278delinsCCT (p.Trp425fs)Pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11
β˜…β˜…β˜†β˜†2025β†’ Residue 425
NM_152490.5(B3GALNT2):c.1311+1G>ALikely pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11
β˜…β˜…β˜†β˜†2025
NM_152490.5(B3GALNT2):c.427C>T (p.Arg143Ter)Pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 143
NM_152490.5(B3GALNT2):c.448C>T (p.Arg150Ter)Pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11|Muscular dystrophy-dystroglycanopathy
β˜…β˜…β˜†β˜†2024β†’ Residue 150
NM_152490.5(B3GALNT2):c.1177C>T (p.Arg393Ter)Pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11
β˜…β˜…β˜†β˜†2024β†’ Residue 393
NM_152490.5(B3GALNT2):c.1368+1G>CPathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11
β˜…β˜…β˜†β˜†2023
NM_152490.5(B3GALNT2):c.842-1G>ALikely pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11
β˜…β˜…β˜†β˜†2023
NM_152490.5(B3GALNT2):c.113-1G>CLikely pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11
β˜…β˜…β˜†β˜†2023
NM_152490.5(B3GALNT2):c.1311+1G>CLikely pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11|B3GALNT2-related disorder
β˜…β˜…β˜†β˜†2022
NM_152490.5(B3GALNT2):c.222G>A (p.Trp74Ter)Pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11
β˜…β˜†β˜†β˜†2026β†’ Residue 74
NM_152490.5(B3GALNT2):c.378dup (p.Glu127Ter)Pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11
β˜…β˜†β˜†β˜†2026β†’ Residue 127
NM_152490.5(B3GALNT2):c.1068dup (p.Asp357Ter)Pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11
β˜…β˜†β˜†β˜†2025β†’ Residue 357
NM_152490.5(B3GALNT2):c.1038_1039del (p.Thr347fs)Pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11
β˜…β˜†β˜†β˜†2025β†’ Residue 347
NM_152490.5(B3GALNT2):c.199C>T (p.Arg67Ter)Pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11
β˜…β˜†β˜†β˜†2025β†’ Residue 67
NM_152490.5(B3GALNT2):c.1152-1G>CLikely pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11
β˜…β˜†β˜†β˜†2025
NM_152490.5(B3GALNT2):c.1418CTC[1] (p.Pro474del)Likely pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11
β˜…β˜†β˜†β˜†2025β†’ Residue 474
View on ClinVar β†—
Related Genes
DAG1Protein interaction85%DPM1Protein interaction85%DPM2Protein interaction85%RXYLT1Protein interaction85%DOLKProtein interaction85%B4GAT1Protein interaction69%
Tissue Expression6 tissues
Heart
100%
Ovary
57%
Brain
49%
Lung
48%
Bone Marrow
35%
Liver
34%
Gene Interaction Network
Click a node to explore
B3GALNT2DAG1DPM1DPM2RXYLT1DOLKB4GAT1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q8NCR0
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.04LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.83 [0.67–1.04]
RankingsWhere B3GALNT2 stands among ~20K protein-coding genes
  • #11,291of 20,598
    Most Researched33
  • #1,175of 5,498
    Most Pathogenic Variants60 Β· top quartile
  • #10,377of 17,882
    Most Constrained (LOEUF)1.04
Genes detectedB3GALNT2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
A 20-year Clinical and Genetic Neuromuscular Cohort Analysis in Lebanon: An International Effort.
PMID: 34602496
J Neuromuscul Dis Β· 2022
1.00
2
Genetic variations and clinical spectrum of dystroglycanopathy in a large cohort of Chinese patients.
PMID: 33200426
Clin Genet Β· 2021
0.90
3
Congenital muscular dystrophies in the UK population: Clinical and molecular spectrum of a large cohort diagnosed over a 12-year period.
PMID: 28688748
Neuromuscul Disord Β· 2017
0.80
4
Pathogenic mechanisms and clinical insights into
PMID: 40665687
J Neuromuscul Dis Β· 2025
0.70
5
Systematic and comprehensive analysis of major localizations of alpha-dystroglycan-specific modifying enzymes.
PMID: 40324206
Glycobiology Β· 2025
0.60