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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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B4GALNT1
beta-1,4-N-acetyl-galactosaminyltransferase 1
Chromosome 12 Β· 12q13.3
NCBI Gene: 2583Ensembl: ENSG00000135454.14HGNC: HGNC:4117UniProt: B4DSP5
42PubMed Papers
21Diseases
0Drugs
40Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase activityganglioside biosynthetic processGolgi membraneGolgi apparatushereditary spastic paraplegia 26Autosomal recessive spastic paraplegia type 26Spastic paraplegiagenetic disorder
✦AI Summary

B4GALNT1 (beta-1,4-N-acetyl-galactosaminyltransferase 1) is a Golgi-localized glycosyltransferase that catalyzes the biosynthesis of gangliosides GM2, GD2, GT2, and GA2 from their precursors GM3, GD3, GT3, and GA3, respectively 1. The enzyme functions through dynamic membrane insertion of hydrophobic surface loops that enable substrate access within the lipid bilayer 2. In disease contexts, loss-of-function B4GALNT1 mutations cause hereditary spastic paraplegia type 26 (SPG26), characterized by progressive lower limb weakness, cognitive impairment, cerebellar ataxia, and peripheral neuropathy 3. Patient-derived mutations impair UDP-GalNAc binding and abolish ganglioside synthesis capacity 3. Additionally, CD38-mediated B4GALNT1 upregulation shifts T cell ganglioside profiles from GM3 to GM2, increasing intracellular calcium and suppressing IL-2 production in systemic lupus erythematosus 4. Conversely, B4GALNT1 overexpression promotes hepatocellular carcinoma (HCC) progression through multiple mechanisms: activating integrin Ξ±2Ξ²1/FAK/AKT signaling 5, reshaping the immunosuppressive microenvironment via HES4-SPP1-TAM/Th2 axis activation 6, enhancing PI3K-AKT-mTOR signaling 7, and promoting epithelial-mesenchymal transition 8. B4GALNT1 overexpression independently predicts poor HCC prognosis and represents a therapeutic target.

Sources cited
1
B4GALNT1 synthesizes gangliosides from GM3, GD3, GT3, and GA3; characterization of human recombinant B4GALNT1 enzyme
PMID: 40942141
2
Crystal structures demonstrate dynamic remodeling of B4GALNT1 substrate binding site; hydrophobic surface loops insert into lipid bilayer to access lipid substrates
PMID: 40593514
3
Loss-of-function B4GALNT1 mutations cause SPG26 with progressive neurological symptoms; mutations impair UDP-GalNAc binding and eliminate GM2S activity
PMID: 39145292
4
CD38 upregulates B4GALNT1 in Sirtuin 1-dependent manner, shifting T cell ganglioside profile from GM3 to GM2 and increasing calcium flux in SLE
PMID: 39333474
5
B4GALNT1 upregulation in HCC promotes stemness and progression via integrin Ξ±2Ξ²1-mediated FAK/AKT activation
PMID: 37965158
6
B4GALNT1 promotes HCC immunosuppression via HES4-SPP1-TAM/Th2 axis; silencing B4GALNT1 enhances PD-1 immunotherapy efficacy
PMID: 39616302
7
B4GALNT1 overexpression promotes HCC cell proliferation and apoptosis resistance via PI3K-AKT-mTOR pathway; independent prognostic factor
PMID: 39829207
8
B4GALNT1 promotes HCC carcinogenesis by regulating epithelial-mesenchymal transition and immune activation
PMID: 37337736
Disease Associationsβ“˜21
hereditary spastic paraplegia 26Open Targets
0.79Strong
Autosomal recessive spastic paraplegia type 26Open Targets
0.76Strong
Spastic paraplegiaOpen Targets
0.55Moderate
genetic disorderOpen Targets
0.49Moderate
complex hereditary spastic paraplegiaOpen Targets
0.37Weak
neurodegenerative diseaseOpen Targets
0.34Weak
Spastic paraparesisOpen Targets
0.27Weak
autismOpen Targets
0.11Weak
hepatocellular carcinomaOpen Targets
0.11Weak
neoplasmOpen Targets
0.10Suggestive
azoospermiaOpen Targets
0.09Suggestive
cancerOpen Targets
0.08Suggestive
partial chromosome Y deletionOpen Targets
0.07Suggestive
spermatogenic failure 71Open Targets
0.06Suggestive
oral squamous cell carcinomaOpen Targets
0.06Suggestive
spermatogenic failure 57Open Targets
0.06Suggestive
spermatogenic failure 50Open Targets
0.06Suggestive
congenital bilateral absence of vas deferensOpen Targets
0.05Suggestive
spermatogenic failure 63Open Targets
0.05Suggestive
spermatogenic failure 25Open Targets
0.05Suggestive
Spastic paraplegia 26, autosomal recessiveUniProt
Pathogenic Variants40
NM_001478.5(B4GALNT1):c.682C>T (p.Arg228Ter)Pathogenic
Hereditary spastic paraplegia 26|Spastic paraplegia
β˜…β˜…β˜†β˜†2026β†’ Residue 228
NM_001478.5(B4GALNT1):c.383+1G>ALikely pathogenic
not provided|Spastic paraplegia
β˜…β˜…β˜†β˜†2025
NM_001478.5(B4GALNT1):c.263dup (p.Leu89fs)Pathogenic
Hereditary spastic paraplegia 26|Inborn genetic diseases|not provided|Spastic paraplegia
β˜…β˜…β˜†β˜†2025β†’ Residue 89
NM_001478.5(B4GALNT1):c.1322C>A (p.Ala441Glu)Likely pathogenic
Hereditary spastic paraplegia 26
β˜…β˜…β˜†β˜†2025β†’ Residue 441
NM_001478.5(B4GALNT1):c.490+1G>APathogenic
not provided|Spastic paraplegia
β˜…β˜…β˜†β˜†2025
NM_001478.5(B4GALNT1):c.1513C>T (p.Arg505Cys)Pathogenic
Hereditary spastic paraplegia 26|Spastic paraparesis
β˜…β˜…β˜†β˜†2024β†’ Residue 505
NM_001478.5(B4GALNT1):c.139del (p.Arg47fs)Pathogenic
not provided|Spastic paraplegia
β˜…β˜…β˜†β˜†2024β†’ Residue 47
NM_001478.5(B4GALNT1):c.532-2A>GPathogenic
Spastic paraplegia|Hereditary spastic paraplegia 26
β˜…β˜…β˜†β˜†2022
NM_001478.5(B4GALNT1):c.1514G>A (p.Arg505His)Pathogenic
Spastic paraplegia
β˜…β˜†β˜†β˜†2025β†’ Residue 505
NM_001478.5(B4GALNT1):c.1008G>A (p.Trp336Ter)Pathogenic
Spastic paraplegia
β˜…β˜†β˜†β˜†2025β†’ Residue 336
NM_001478.5(B4GALNT1):c.1435dup (p.Val479fs)Pathogenic
Spastic paraplegia
β˜…β˜†β˜†β˜†2025β†’ Residue 479
NM_001478.5(B4GALNT1):c.675C>G (p.Tyr225Ter)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 225
NM_001478.5(B4GALNT1):c.1458dup (p.Leu487fs)Pathogenic
Hereditary spastic paraplegia 26
β˜…β˜†β˜†β˜†2025β†’ Residue 487
NM_001478.5(B4GALNT1):c.1151del (p.Gly384fs)Likely pathogenic
Hereditary spastic paraplegia 26
β˜…β˜†β˜†β˜†2025β†’ Residue 384
NM_001478.5(B4GALNT1):c.1417dup (p.Val473fs)Pathogenic
Spastic paraplegia
β˜…β˜†β˜†β˜†2025β†’ Residue 473
NM_001478.5(B4GALNT1):c.263del (p.Gly88fs)Pathogenic
Spastic paraplegia
β˜…β˜†β˜†β˜†2024β†’ Residue 88
NM_001478.5(B4GALNT1):c.1167dup (p.Ser390fs)Pathogenic
Spastic paraplegia
β˜…β˜†β˜†β˜†2024β†’ Residue 390
NM_001478.5(B4GALNT1):c.942_952del (p.Ser314fs)Pathogenic
Spastic paraplegia
β˜…β˜†β˜†β˜†2024β†’ Residue 314
NM_001478.5(B4GALNT1):c.532-1G>CPathogenic
not provided
β˜…β˜†β˜†β˜†2024
NM_001478.5(B4GALNT1):c.358C>T (p.Gln120Ter)Pathogenic
Hereditary spastic paraplegia 26|not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 120
View on ClinVar β†—
Related Genes
CHSY1Protein interaction99%GLB1Protein interaction96%SLC33A1Protein interaction94%ST3GAL5Protein interaction92%ST8SIA1Protein interaction92%B3GALT4Protein interaction92%
Tissue Expression6 tissues
Brain
100%
Heart
24%
Ovary
8%
Lung
6%
Liver
4%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
B4GALNT1CHSY1GLB1SLC33A1ST3GAL5ST8SIA1B3GALT4
PROTEIN STRUCTURE
Preparing viewer…
PDB9H6L Β· 2.67 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.11LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.86 [0.68–1.11]
RankingsWhere B4GALNT1 stands among ~20K protein-coding genes
  • #9,838of 20,598
    Most Researched42
  • #1,551of 5,498
    Most Pathogenic Variants40
  • #11,433of 17,882
    Most Constrained (LOEUF)1.11
Genes detectedB4GALNT1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
B4GALNT1 promotes hepatocellular carcinoma stemness and progression via integrin Ξ±2Ξ²1-mediated FAK and AKT activation.
PMID: 37965158
JHEP Rep Β· 2023
1.00
2
Glycosyltransferase B4GALNT1 promotes immunosuppression in hepatocellular carcinoma via the HES4-SPP1-TAM/Th2 axis.
PMID: 39616302
Mol Biomed Β· 2024
0.90
3
Characterization of Human Recombinant Ξ²1,4-GalNAc-Transferase B4GALNT1 and Inhibition by Selected Compounds.
PMID: 40942141
Molecules Β· 2025
0.80
4
CD38 in SLE CD4 T cells promotes Ca
PMID: 39333474
Nat Commun Β· 2024
0.70
5
Functional evaluation of novel variants of
PMID: 39145292
Front Neurosci Β· 2024
0.60