HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
ST3GAL5
ST3 beta-galactoside alpha-2,3-sialyltransferase 5
Chromosome 2 Β· 2p11.2
NCBI Gene: 8869Ensembl: ENSG00000115525.18HGNC: HGNC:10872UniProt: A0A0S2Z4S6
50PubMed Papers
21Diseases
0Drugs
49Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
lactosylceramide alpha-2,3-sialyltransferase activityglycoprotein biosynthetic processglycosphingolipid biosynthetic processbeta-galactoside (CMP) alpha-2,3-sialyltransferase activityGM3 synthase deficiencyIntellectual disabilityDevelopmental regressiongenetic disorder
✦AI Summary

ST3GAL5 (ST3 beta-galactoside alpha-2,3-sialyltransferase 5) is a Golgi-resident sialyltransferase that catalyzes the transfer of sialyl groups from CMP-NeuAc to the non-reducing terminal galactose of glycosphingolipids, primarily synthesizing ganglioside GM3 1. The enzyme can also accept alternative substrates including D-galactosylceramide and asialo-GM1/GM2, though with lower efficiency [UniProt annotation]. ST3GAL5-synthesized gangliosides regulate multiple cellular processes including proliferation, differentiation, and apoptosis through lipid raft organization and receptor signaling modulation 2. Pathologically, ST3GAL5 dysfunction causes GM3 synthase deficiency, manifesting as salt and pepper developmental regression syndrome characterized by intellectual disability, epilepsy, microcephaly, hearing loss, and pigmentation abnormalities 34. Beyond monogenic disease, reduced ST3GAL5 expression correlates with better survival in colorectal cancer, while GM3 deficiency promotes ferroptosis in vascular smooth muscle cells and exacerbates abdominal aortic aneurysm development 5. Additionally, ST3GAL5-mediated sialylation of neutrophil glycoproteins like CD177 restricts neuroinflammation following CNS injury, and valproic acidβ€”an FDA-approved ST3GAL5 upregulatorβ€”attenuates neuroinflammatory responses 6. These findings position ST3GAL5 as a pleiotropic enzyme with roles in developmental disease, vascular pathology, cancer progression, and neuroimmunity.

Sources cited
1
ST3GAL5 is the GM3 synthase responsible for initiating biosynthesis of complex gangliosides and is essential for auditory function
PMID: 29747813
2
ST3GAL5 mutations cause GM3 synthase deficiency with intellectual disability, microcephaly, developmental delay, and hearing/visual impairments
PMID: 39533347
3
ST3GAL5 mutations cause salt and pepper developmental regression syndrome with epilepsy, intellectual disability, and developmental delay
PMID: 36833282
4
GM3 and ST3GAL5 are reduced in abdominal aortic aneurysm; ST3GAL5 deficiency promotes ferroptosis in vascular smooth muscle cells and AAA development
PMID: 38018467
5
ST3GAL5 mediates sialylation of neutrophil CD177; valproic acid upregulates ST3GAL5 and attenuates neuroinflammation following CNS injury
PMID: 40244680
6
ST3GAL5-synthesized gangliosides inhibit TGF-Ξ²-induced EMT through TΞ²RI degradation; ST3GAL5 is weakly expressed in lung cancer and correlates with good prognosis
PMID: 36504224
7
ST3GAL5 catalyzes Ξ±2-3 sialylation of glycosphingolipids; lower ST3GAL5 expression associates with better colorectal cancer survival
PMID: 38785323
8
ST3GAL5 genetic variants show altered promoter activity but no definitive association with thyroid-associated ophthalmopathy severity
PMID: 29047240
Disease Associationsβ“˜21
GM3 synthase deficiencyOpen Targets
0.80Strong
Intellectual disabilityOpen Targets
0.50Moderate
Developmental regressionOpen Targets
0.37Weak
genetic disorderOpen Targets
0.34Weak
diabetes mellitusOpen Targets
0.22Weak
alcohol drinkingOpen Targets
0.22Weak
infantile epilepsy syndromeOpen Targets
0.19Weak
neoplasmOpen Targets
0.09Suggestive
MODYOpen Targets
0.08Suggestive
bladder transitional cell carcinomaOpen Targets
0.08Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.08Suggestive
type 1 diabetes mellitusOpen Targets
0.07Suggestive
attention deficit hyperactivity disorderOpen Targets
0.07Suggestive
colorectal carcinomaOpen Targets
0.07Suggestive
hyperinsulinism due to glucokinase deficiencyOpen Targets
0.06Suggestive
lung cancerOpen Targets
0.06Suggestive
maturity-onset diabetes of the young type 4Open Targets
0.06Suggestive
diabetes mellitus, transient neonatal, 2Open Targets
0.05Suggestive
hereditary attention deficit-hyperactivity disorderOpen Targets
0.05Suggestive
maturity-onset diabetes of the young type 3Open Targets
0.05Suggestive
Salt and pepper developmental regression syndromeUniProt
Pathogenic Variants49
NM_003896.4(ST3GAL5):c.297T>G (p.Tyr99Ter)Pathogenic
GM3 synthase deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 99
NM_003896.4(ST3GAL5):c.353del (p.Lys118fs)Pathogenic
GM3 synthase deficiency|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 118
NM_003896.4(ST3GAL5):c.862C>T (p.Arg288Ter)Pathogenic
GM3 synthase deficiency|not provided|ST3GAL5-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 288
NM_003896.4(ST3GAL5):c.1024G>A (p.Gly342Ser)Pathogenic
GM3 synthase deficiency|Inborn genetic diseases
β˜…β˜…β˜†β˜†2024β†’ Residue 342
NM_003896.4(ST3GAL5):c.839dup (p.Glu281fs)Pathogenic
GM3 synthase deficiency
β˜…β˜…β˜†β˜†2024β†’ Residue 281
NM_003896.4(ST3GAL5):c.147G>A (p.Trp49Ter)Pathogenic
GM3 synthase deficiency|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 49
NM_003896.4(ST3GAL5):c.1255T>C (p.Ter419Arg)Pathogenic
Intellectual disability|GM3 synthase deficiency
β˜…β˜…β˜†β˜†2024β†’ Residue 419
NM_003896.4(ST3GAL5):c.1000C>T (p.Arg334Ter)Pathogenic
GM3 synthase deficiency|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 334
NM_003896.4(ST3GAL5):c.850-1G>ALikely pathogenic
GM3 synthase deficiency
β˜…β˜…β˜†β˜†2023
NM_003896.4(ST3GAL5):c.282del (p.Met94fs)Pathogenic
GM3 synthase deficiency
β˜…β˜…β˜†β˜†2023β†’ Residue 94
NM_003896.4(ST3GAL5):c.794del (p.Leu265fs)Pathogenic
GM3 synthase deficiency|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 265
NM_003896.4(ST3GAL5):c.337C>T (p.Gln113Ter)Pathogenic
GM3 synthase deficiency
β˜…β˜…β˜†β˜†2023β†’ Residue 113
NM_003896.4(ST3GAL5):c.740G>A (p.Gly247Asp)Likely pathogenic
GM3 synthase deficiency|Intellectual disability
β˜…β˜…β˜†β˜†2020β†’ Residue 247
NM_003896.4(ST3GAL5):c.601G>A (p.Gly201Arg)Pathogenic
GM3 synthase deficiency
β˜…β˜†β˜†β˜†2026β†’ Residue 201
NM_003896.4(ST3GAL5):c.611T>C (p.Leu204Pro)Likely pathogenic
GM3 synthase deficiency
β˜…β˜†β˜†β˜†2025β†’ Residue 204
NM_003896.4(ST3GAL5):c.874del (p.Trp292fs)Pathogenic
GM3 synthase deficiency
β˜…β˜†β˜†β˜†2024β†’ Residue 292
NM_003896.4(ST3GAL5):c.319-1G>CPathogenic
not provided
β˜…β˜†β˜†β˜†2024
NM_003896.4(ST3GAL5):c.1000del (p.Arg334fs)Pathogenic
GM3 synthase deficiency
β˜…β˜†β˜†β˜†2024β†’ Residue 334
NM_003896.4(ST3GAL5):c.422dup (p.Leu141fs)Pathogenic
GM3 synthase deficiency
β˜…β˜†β˜†β˜†2024β†’ Residue 141
NM_003896.4(ST3GAL5):c.47_62del (p.Pro16fs)Pathogenic
GM3 synthase deficiency
β˜…β˜†β˜†β˜†2024β†’ Residue 16
View on ClinVar β†—
Related Genes
B4GALNT1Protein interaction92%GLB1Protein interaction92%HEXAProtein interaction92%HEXBProtein interaction92%ST8SIA1Protein interaction92%B4GALT6Protein interaction69%
Tissue Expression6 tissues
Brain
100%
Lung
73%
Ovary
62%
Bone Marrow
61%
Liver
56%
Heart
18%
Gene Interaction Network
Click a node to explore
ST3GAL5B4GALNT1GLB1HEXAHEXBST8SIA1B4GALT6
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q9UNP4
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.74LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.52 [0.37–0.74]
RankingsWhere ST3GAL5 stands among ~20K protein-coding genes
  • #8,884of 20,598
    Most Researched50
  • #1,360of 5,498
    Most Pathogenic Variants49 Β· top quartile
  • #5,757of 17,882
    Most Constrained (LOEUF)0.74
Genes detectedST3GAL5
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Ganglioside GM3 Protects Against Abdominal Aortic Aneurysm by Suppressing Ferroptosis.
PMID: 38018467
Circulation Β· 2024
1.00
2
St3gal5-mediated sialylation of glyco-CD177 on neutrophils restricts neuroinflammation following CNS injury.
PMID: 40244680
Proc Natl Acad Sci U S A Β· 2025
0.90
3
Identification of a novel ST3GAL5 variant in a Chinese boy with GM3 synthase deficiency and literature review of variants in the ST3GAL5 gene.
PMID: 39533347
Orphanet J Rare Dis Β· 2024
0.80
4
Limited impact of cancer-derived gangliosides on anti-tumor immunity in colorectal cancer.
PMID: 38785323
Glycobiology Β· 2024
0.70
5
Biology of GM3 Ganglioside.
PMID: 29747813
Prog Mol Biol Transl Sci Β· 2018
0.60