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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
HEXB
hexosaminidase subunit beta
Chromosome 5 Β· 5q13.3
NCBI Gene: 3074Ensembl: ENSG00000049860.14HGNC: HGNC:4879UniProt: A0A024RAJ6
141PubMed Papers
21Diseases
0Drugs
224Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
acetylglucosaminyltransferase activityganglioside catabolic processidentical protein bindingprotein bindingSandhoff diseaseSandhoff disease, infantile formSandhoff disease, adult formSandhoff disease, juvenile form
✦AI Summary

HEXB encodes the beta subunit of hexosaminidase, a lysosomal enzyme essential for degrading glycoconjugates and gangliosides. The enzyme hydrolyzes N-acetyl-D-hexosamine residues from oligosaccharides, neutral glycolipids, and mucopolysaccharides 12. Critically, only the hexosaminidase A isozyme (containing HEXB) efficiently degrades GM2 gangliosides in the presence of GM2 activator protein 23. HEXB plays a vital role in microglia-neuron homeostasis: microglia deliver HEXB to neurons for GM2 degradation, and HEXB deficiency causes pathological GM2 accumulation triggering neurodegeneration in Sandhoff disease 4. HEXB mutations cause GM2-gangliosidosis type 2 (Sandhoff disease), characterized by progressive neurological deterioration; disease pathogenesis involves cGAS-STING-mediated innate immune activation triggered by lysosomal dysfunction 5. Beyond lysosomal storage disease, HEXB is implicated in cancer metabolism, where it promotes glycolysis in glioblastoma through HIF1Ξ± stabilization and facilitates extracellular vesicle release in hepatocellular carcinoma 67. AAV gene therapy targeting HEXB has shown early safety and proof-of-concept efficacy in Tay-Sachs patients 8. HEXB serves as a robust microglia-specific marker for CNS research 9.

Sources cited
1
HEXB hydrolyzes non-reducing end N-acetyl-D-hexosamine from glycoconjugates
PMID: 11707436
2
Only hexosaminidase A isozyme containing HEXB degrades GM2 gangliosides with GM2A
PMID: 8123671
3
HEXB-containing isozyme A responsible for GM2 ganglioside degradation
PMID: 8672428
4
Microglia deliver HEXB to neurons for GM2 degradation; HEXB deficiency causes GM2 accumulation and neurodegeneration in Sandhoff disease
PMID: 40769205
5
HEXB mutations trigger cGAS-STING signaling in lysosomal storage disorders leading to neuronal death
PMID: 38253667
6
HEXB promotes glycolysis and tumorigenesis in glioblastoma through HIF1Ξ± stabilization
PMID: 39353936
7
HEXB mediates extracellular vesicle release in hepatocellular carcinoma via lysosome-MVB disruption
PMID: 38944674
8
AAV gene therapy using HEXB shows safety and proof-of-concept in Tay-Sachs disease patients
PMID: 35145305
9
HEXB is a stably expressed microglia core gene useful for microglia-specific targeting
PMID: 32541832
Disease Associationsβ“˜21
Sandhoff diseaseOpen Targets
0.84Strong
Sandhoff disease, infantile formOpen Targets
0.57Moderate
Sandhoff disease, adult formOpen Targets
0.55Moderate
Sandhoff disease, juvenile formOpen Targets
0.55Moderate
genetic disorderOpen Targets
0.49Moderate
GM2 gangliosidosisOpen Targets
0.46Moderate
neurodegenerative diseaseOpen Targets
0.39Weak
Alzheimer diseaseOpen Targets
0.30Weak
Parkinson diseaseOpen Targets
0.30Weak
lysosomal storage diseaseOpen Targets
0.29Weak
multiple sclerosisOpen Targets
0.29Weak
gestational diabetesOpen Targets
0.28Weak
liver diseaseOpen Targets
0.12Weak
poisoningOpen Targets
0.12Weak
response to xenobiotic stimulusOpen Targets
0.12Weak
glioblastoma multiformeOpen Targets
0.10Suggestive
essential tremorOpen Targets
0.09Suggestive
Young adult-onset ParkinsonismOpen Targets
0.08Suggestive
gliomaOpen Targets
0.08Suggestive
colorectal carcinomaOpen Targets
0.07Suggestive
GM2-gangliosidosis 2UniProt
Pathogenic Variants224
NM_000521.4(HEXB):c.1294dup (p.Glu432fs)Pathogenic
Sandhoff disease|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 432
NM_000521.4(HEXB):c.1250C>T (p.Pro417Leu)Pathogenic
Sandhoff disease, adult form|Sandhoff disease, juvenile form|Sandhoff disease|not provided|HEXB-related disorder|Inborn genetic diseases|See cases
β˜…β˜…β˜†β˜†2026β†’ Residue 417
NM_000521.4(HEXB):c.796T>G (p.Tyr266Asp)Pathogenic
not provided|Sandhoff disease
β˜…β˜…β˜†β˜†2026β†’ Residue 266
NM_000521.4(HEXB):c.1509-26G>APathogenic
Sandhoff disease|Sandhoff disease, juvenile form|not provided|Inborn genetic diseases
β˜…β˜…β˜†β˜†2026
NM_000521.4(HEXB):c.838_863dup (p.Glu288fs)Pathogenic
Sandhoff disease
β˜…β˜…β˜†β˜†2025β†’ Residue 288
NM_000521.4(HEXB):c.1513C>T (p.Arg505Trp)Pathogenic
Sandhoff disease|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 505
NM_000521.4(HEXB):c.1510C>T (p.Pro504Ser)Pathogenic
Sandhoff disease, chronic|not provided|Sandhoff disease
β˜…β˜…β˜†β˜†2025β†’ Residue 504
NM_000521.4(HEXB):c.1023_1026del (p.Ser341fs)Pathogenic
Sandhoff disease|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 341
NM_000521.4(HEXB):c.1517_1529dup (p.Glu511fs)Pathogenic
not provided|Sandhoff disease
β˜…β˜…β˜†β˜†2025β†’ Residue 511
NM_000521.4(HEXB):c.1598G>A (p.Arg533His)Pathogenic
Sandhoff disease|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 533
NM_000521.4(HEXB):c.1345del (p.Trp449fs)Pathogenic
Sandhoff disease
β˜…β˜…β˜†β˜†2025β†’ Residue 449
NM_000521.4(HEXB):c.552T>G (p.Tyr184Ter)Pathogenic
not provided|Sandhoff disease
β˜…β˜…β˜†β˜†2025β†’ Residue 184
NM_000521.4(HEXB):c.1310_1311del (p.Thr437fs)Pathogenic
Sandhoff disease
β˜…β˜…β˜†β˜†2025β†’ Residue 437
NM_000521.4(HEXB):c.1538T>C (p.Leu513Pro)Pathogenic
Sandhoff disease
β˜…β˜…β˜†β˜†2025β†’ Residue 513
NM_000521.4(HEXB):c.761T>C (p.Leu254Ser)Pathogenic
Sandhoff disease
β˜…β˜…β˜†β˜†2025β†’ Residue 254
NM_000521.4(HEXB):c.1082+5G>APathogenic
Sandhoff disease
β˜…β˜…β˜†β˜†2025
NM_000521.4(HEXB):c.1082G>A (p.Trp361Ter)Pathogenic
Sandhoff disease
β˜…β˜…β˜†β˜†2025β†’ Residue 361
NM_000521.4(HEXB):c.94C>T (p.Gln32Ter)Pathogenic
Sandhoff disease
β˜…β˜…β˜†β˜†2025β†’ Residue 32
NM_000521.4(HEXB):c.1417G>A (p.Gly473Ser)Pathogenic
not provided|Sandhoff disease
β˜…β˜…β˜†β˜†2025β†’ Residue 473
NM_000521.4(HEXB):c.1015G>T (p.Glu339Ter)Likely pathogenic
Sandhoff disease
β˜…β˜…β˜†β˜†2025β†’ Residue 339
View on ClinVar β†—
Related Genes
GM2AProtein interaction95%A4GALTProtein interaction95%NAGAProtein interaction94%GLAProtein interaction94%GLB1Protein interaction94%GNSProtein interaction94%
Tissue Expression6 tissues
Heart
100%
Lung
87%
Liver
59%
Bone Marrow
50%
Ovary
46%
Brain
25%
Gene Interaction Network
Click a node to explore
HEXBGM2AA4GALTNAGAGLAGLB1GNS
PROTEIN STRUCTURE
Preparing viewer…
PDB1NOW Β· 2.20 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.09LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.76 [0.54–1.09]
RankingsWhere HEXB stands among ~20K protein-coding genes
  • #3,255of 20,598
    Most Researched141 Β· top quartile
  • #292of 5,498
    Most Pathogenic Variants224 Β· top 10%
  • #11,165of 17,882
    Most Constrained (LOEUF)1.09
Genes detectedHEXB
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
AAV gene therapy for Tay-Sachs disease.
PMID: 35145305
Nat Med Β· 2022
1.00
2
Microglia-neuron crosstalk through Hex-GM2-MGL2 maintains brain homeostasis.
PMID: 40769205
Nature Β· 2025
0.90
3
A high-fidelity Cas9 mutant delivered as a ribonucleoprotein complex enables efficient gene editing in human hematopoietic stem and progenitor cells.
PMID: 30082871
Nat Med Β· 2018
0.80
4
Hexosaminidase B-driven cancer cell-macrophage co-dependency promotes glycolysis addiction and tumorigenesis in glioblastoma.
PMID: 39353936
Nat Commun Β· 2024
0.70
5
Oxidative stress induces extracellular vesicle release by upregulation of HEXB to facilitate tumour growth in experimental hepatocellular carcinoma.
PMID: 38944674
J Extracell Vesicles Β· 2024
0.60