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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
GM2A
ganglioside GM2 activator
Chromosome 5 Β· 5q33.1
NCBI Gene: 2760Ensembl: ENSG00000196743.10HGNC: HGNC:4367UniProt: P17900
69PubMed Papers
21Diseases
0Drugs
17Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
extracellular exosomeprotein bindinglipid carrier activityganglioside catabolic processGM2-gangliosidosis, AB variantTay-Sachs disease AB variantneurodegenerative diseaselysosomal storage disease
✦AI Summary

GM2A encodes the ganglioside GM2 activator protein, a non-catalytic lysosomal protein essential for ganglioside catabolism 1. GM2A functions as a lipid binding and transport protein that extracts GM2 ganglioside molecules from neuronal membranes and presents them in soluble form to the lysosomal enzyme Ξ²-hexosaminidase A, which cleaves N-acetyl-D-galactosamine to convert GM2 to GM3 1. The protein exhibits cholesterol transfer activity and phospholipase activity, accommodating multiple single-chain phospholipids in its large binding pocket 1. GM2A mutations cause AB-variant GM2 gangliosidosis, a rare autosomal recessive lysosomal storage disorder characterized by severe neurological deterioration beginning in infancy 23. Pathologically, GM2A deficiency results in GM2 and GA2 ganglioside accumulation in neurons, leading to gliosis, demyelination, and neuronal death 45. Recent evidence suggests elevated GM2A in Alzheimer's disease brain tissue reduces neurite integrity and spontaneous neuronal activity, indicating potential involvement in neurodegeneration beyond classical lysosomal storage disease 6. Animal models confirm that GM2A-deficient mice with impaired compensatory NEU3-mediated degradation pathways exhibit severe ataxia, neurological decline, and early lethality, phenotypically resembling human infantile-onset disease 5.

Sources cited
1
GM2A forms substrate-complex with GM2 ganglioside enabling degradation by Ξ²-hexosaminidase A; mutations cause AB-variant GM2 gangliosidosis
PMID: 7713516
2
GM2A mutations cause AB-variant GM2 gangliosidosis, a group of recessive neurological disorders with GM2 ganglioside accumulation in neurons
PMID: 11339652
3
GM2A deficiency presents in infantile-, juvenile-, and adult-onset forms with progressive neurological deterioration and cherry-red spots
PMID: 33819415
4
Elevated GM2A in human brain tissue from Alzheimer's disease patients reduces neurite integrity and spontaneous neuronal activity in cultured neurons
PMID: 36131294
5
GM2A deficiency results in GM2 and GA2 ganglioside storage in brain with increased lyso-phospholipids and neurological deterioration
PMID: 39644670
6
Gm2a-/-Neu3-/- double knockout mice exhibit severe phenotype with ataxia, neurodegeneration, and lethality, demonstrating compensatory NEU3 pathway in standard models
PMID: 38098938
Disease Associationsβ“˜21
GM2-gangliosidosis, AB variantOpen Targets
0.81Strong
Tay-Sachs disease AB variantOpen Targets
0.81Strong
neurodegenerative diseaseOpen Targets
0.55Moderate
lysosomal storage diseaseOpen Targets
0.50Moderate
Alzheimer diseaseOpen Targets
0.47Moderate
Parkinson diseaseOpen Targets
0.46Moderate
multiple sclerosisOpen Targets
0.46Moderate
Tay-Sachs diseaseOpen Targets
0.45Moderate
SeizureOpen Targets
0.37Weak
femur fractureOpen Targets
0.28Weak
neuroinflammatory disorderOpen Targets
0.26Weak
genetic disorderOpen Targets
0.19Weak
chronic obstructive pulmonary diseaseOpen Targets
0.14Weak
breast cancerOpen Targets
0.08Suggestive
hypoparathyroidism, familial isolated, 2Open Targets
0.05Suggestive
familial isolated hyperparathyroidismOpen Targets
0.04Suggestive
hyperparathyroidismOpen Targets
0.04Suggestive
blue diaper syndromeOpen Targets
0.04Suggestive
intestinal hypomagnesemia 1Open Targets
0.04Suggestive
Primary hypomagnesemia with secondary hypocalcemiaOpen Targets
0.04Suggestive
GM2-gangliosidosis ABUniProt
Pathogenic Variants17
NM_000405.5(GM2A):c.367del (p.Glu123fs)Likely pathogenic
not provided|Tay-Sachs disease, variant AB
β˜…β˜…β˜†β˜†2025β†’ Residue 123
NM_000405.5(GM2A):c.333del (p.Cys112fs)Pathogenic
Tay-Sachs disease|Tay-Sachs disease, variant AB
β˜…β˜…β˜†β˜†2024β†’ Residue 112
NM_000405.5(GM2A):c.259G>T (p.Glu87Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 87
NM_000405.5(GM2A):c.226_227del (p.Leu76fs)Likely pathogenic
Tay-Sachs disease, variant AB
β˜…β˜†β˜†β˜†2024β†’ Residue 76
NM_000405.5(GM2A):c.427-14T>ALikely pathogenic
Tay-Sachs disease, variant AB
β˜…β˜†β˜†β˜†2023
NM_000405.5(GM2A):c.364G>A (p.Gly122Arg)Likely pathogenic
Tay-Sachs disease, variant AB
β˜…β˜†β˜†β˜†2023β†’ Residue 122
NM_000405.5(GM2A):c.209del (p.Gly70fs)Pathogenic
Tay-Sachs disease, variant AB
β˜…β˜†β˜†β˜†2022β†’ Residue 70
NM_000405.5(GM2A):c.4C>T (p.Gln2Ter)Likely pathogenic
Tay-Sachs disease, variant AB
β˜…β˜†β˜†β˜†2021β†’ Residue 2
NM_000405.5(GM2A):c.262_264del (p.Lys88del)Likely pathogenic
Tay-Sachs disease, variant AB
β˜…β˜†β˜†β˜†2020β†’ Residue 88
NM_000405.5(GM2A):c.413G>A (p.Cys138Tyr)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2018β†’ Residue 138
NC_000005.10:g.(?_151253197)_(151267660_?)delPathogenic
Tay-Sachs disease, variant AB
β˜…β˜†β˜†β˜†2017
NM_000405.5(GM2A):c.244-2A>TLikely pathogenic
Tay-Sachs disease, variant AB
β˜†β˜†β˜†β˜†2015
NM_000405.5(GM2A):c.472G>T (p.Glu158Ter)Likely pathogenic
Tay-Sachs disease, variant AB
β˜†β˜†β˜†β˜†2015β†’ Residue 158
NM_000405.5(GM2A):c.160G>T (p.Glu54Ter)Pathogenic
Tay-Sachs disease, variant AB
β˜†β˜†β˜†β˜†1999β†’ Residue 54
NM_000405.5(GM2A):c.410del (p.His137fs)Pathogenic
Tay-Sachs disease, variant AB
β˜†β˜†β˜†β˜†1996β†’ Residue 137
NM_000405.5(GM2A):c.506G>C (p.Arg169Pro)Pathogenic
Tay-Sachs disease, variant AB
β˜†β˜†β˜†β˜†1993β†’ Residue 169
NM_000405.5(GM2A):c.412T>C (p.Cys138Arg)Pathogenic
Tay-Sachs disease, variant AB
β˜†β˜†β˜†β˜†1992β†’ Residue 138
View on ClinVar β†—
Related Genes
HEXAProtein interaction100%HEXBProtein interaction95%ETFAProtein interaction93%OGAProtein interaction82%NPC2Protein interaction81%NEU2Shared pathway40%
Tissue Expression6 tissues
Heart
100%
Brain
84%
Lung
68%
Bone Marrow
60%
Ovary
41%
Liver
34%
Gene Interaction Network
Click a node to explore
GM2AHEXAHEXBETFAOGANPC2NEU2
PROTEIN STRUCTURE
Preparing viewer…
PDB2AG4 Β· 1.80 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.97LoF Tolerant
pLIβ“˜
0.12Tolerant
Observed/Expected LoF0.49 [0.27–0.97]
RankingsWhere GM2A stands among ~20K protein-coding genes
  • #6,802of 20,598
    Most Researched69
  • #2,345of 5,498
    Most Pathogenic Variants17
  • #9,182of 17,882
    Most Constrained (LOEUF)0.97
Genes detectedGM2A
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
The GM2 gangliosidoses databases: allelic variation at the HEXA, HEXB, and GM2A gene loci.
PMID: 11339652
Genet Med Β· 2000
1.00
2
PMID: 36007105
0.90
3
Elevated ganglioside GM2 activator (GM2A) in human brain tissue reduces neurite integrity and spontaneous neuronal activity.
PMID: 36131294
Mol Neurodegener Β· 2022
0.80
4
Two patients from Turkey with a novel variant in the
PMID: 33819415
J Pediatr Endocrinol Metab Β· 2021
0.70
5
The mouse gene encoding the GM2 activator protein (Gm2a): cDNA sequence, expression, and chromosome mapping.
PMID: 7713516
Genomics Β· 1994
0.60