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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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BATF3
basic leucine zipper ATF-like transcription factor 3
Chromosome 1 · 1q32.3
NCBI Gene: 55509Ensembl: ENSG00000123685.9HGNC: HGNC:28915UniProt: Q9NR55
36PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
negative regulation of transcription by RNA polymerase IIRNA polymerase II cis-regulatory region sequence-specific DNA bindingDNA-binding transcription repressor activity, RNA polymerase II-specificnucleolusallergic rhinitisEczematoid dermatitisatopic eczemaneurodegenerative disease
✦AI Summary

BATF3 is an AP-1 family transcription factor that serves as a master regulator of dendritic cell differentiation and anti-tumor immunity. Functionally, BATF3 controls the development of CD8α+ conventional dendritic cells (cDC1) and CD103+ dendritic cells 1, which are critical for cross-presenting antigens to CD8+ T cells and producing IL-12 in response to pathogens. BATF3 operates as a heterodimer with JUN family proteins to recognize DNA sequences and regulate target gene expression 1. Mechanistically, BATF3 forms part of a minimal transcriptional network with PU.1 and IRF8 that is sufficient to reprogram differentiated cells into functional antigen-presenting cells 23. This reprogramming induces cDC1-like transcriptional and epigenetic programs, restoring antigen presentation machinery and costimulatory molecules on tumor cells 3. Clinically, BATF3-dependent dendritic cells are essential for successful cancer immunotherapy. Radiation-induced anti-tumor immunity requires BATF3+ DC recruitment and activation 4, while BATF3+ DCs mediate therapy-elicited neutrophil responses critical for tumor control 5. In adoptive T cell therapy, BATF3 overexpression enhances CAR-T cell potency and programs transcriptional signatures correlating with positive clinical response 6. These findings establish BATF3 as a key target for in vivo cell reprogramming approaches in cancer immunotherapy 7.

Sources cited
1
BATF3 is a transcription factor that controls cDC1 and CD103+ dendritic cell development, part of a regulatory network with other transcription factors
PMID: 29313948
2
PU.1, IRF8, and BATF3 are sufficient to reprogram fibroblasts into functional dendritic cells capable of antigen presentation and cross-presentation
PMID: 30530727
3
PIB (PU.1, IRF8, BATF3) reprogramming induces cDC1 phenotype in tumor cells, restoring antigen presentation and costimulatory molecules
PMID: 37418548
4
BATF3-dependent dendritic cells are essential for radiation-induced anti-tumor immunity and CD8+ T cell priming
PMID: 28598415
5
BATF3-dependent DCs are required for therapy-elicited neutrophil response that is essential for successful cancer immunotherapy
PMID: 37001504
6
BATF3 overexpression in CD8+ T cells enhances CAR-T cell potency and programs transcriptional profiles correlating with positive clinical response
PMID: 37945901
7
BATF3 delivery enables in vivo reprogramming of tumor cells into dendritic-like cells for cancer immunotherapy with long-term systemic immunity
PMID: 39236156
Disease Associationsⓘ20
allergic rhinitisOpen Targets
0.44Moderate
Eczematoid dermatitisOpen Targets
0.41Moderate
atopic eczemaOpen Targets
0.39Weak
neurodegenerative diseaseOpen Targets
0.34Weak
allergic diseaseOpen Targets
0.32Weak
multiple sclerosisOpen Targets
0.31Weak
deep vein thrombosisOpen Targets
0.31Weak
Abnormal thrombosisOpen Targets
0.31Weak
respiratory system diseaseOpen Targets
0.31Weak
neoplasmOpen Targets
0.11Weak
infectionOpen Targets
0.10Weak
anaplastic large cell lymphomaOpen Targets
0.09Suggestive
colorectal carcinomaOpen Targets
0.09Suggestive
metabolic syndromeOpen Targets
0.07Suggestive
Chronic mucocutaneous candidosisOpen Targets
0.06Suggestive
lymphomaOpen Targets
0.06Suggestive
ThrombocytopeniaOpen Targets
0.06Suggestive
severe combined immunodeficiency due to CARD11 deficiencyOpen Targets
0.06Suggestive
autosomal dominant macrothrombocytopeniaOpen Targets
0.05Suggestive
thrombocytopenia 4Open Targets
0.05Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
JUNProtein interaction98%JUNBProtein interaction92%MPPE1Protein interaction87%JUNDProtein interaction86%ITGAXProtein interaction82%ITGAEProtein interaction80%
Tissue Expression6 tissues
Lung
100%
Bone Marrow
78%
Liver
27%
Heart
21%
Brain
21%
Ovary
15%
Gene Interaction Network
Click a node to explore
BATF3JUNJUNBMPPE1JUNDITGAXITGAE
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q9NR55
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.09LoF Tolerant
pLIⓘ
0.06Tolerant
Observed/Expected LoF0.55 [0.30–1.09]
RankingsWhere BATF3 stands among ~20K protein-coding genes
  • #10,738of 20,598
    Most Researched36
  • #11,156of 17,882
    Most Constrained (LOEUF)1.09
Genes detectedBATF3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
In vivo dendritic cell reprogramming for cancer immunotherapy.
PMID: 39236156
Science · 2024
1.00
2
Human dendritic cell subsets: an update.
PMID: 29313948
Immunology · 2018
0.90
3
A neutrophil response linked to tumor control in immunotherapy.
PMID: 37001504
Cell · 2023
0.80
4
Restoring tumor immunogenicity with dendritic cell reprogramming.
PMID: 37418548
Sci Immunol · 2023
0.70
5
CXCR3 expression in regulatory T cells drives interactions with type I dendritic cells in tumors to restrict CD8
PMID: 37392735
Immunity · 2023
0.60