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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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BAZ2A
bromodomain adjacent to zinc finger domain 2A
Chromosome 12 · 12q13.3
NCBI Gene: 11176Ensembl: ENSG00000076108.12HGNC: HGNC:962UniProt: F8VU39
83PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedTranscription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingnucleushistone bindingnuclear speckneurodegenerative diseasepremature birthatrial fibrillationposterior cortical atrophy
✦AI Summary

BAZ2A (bromodomain adjacent to zinc finger domain 2A) is a regulatory subunit of ATP-dependent chr12 remodeling complexes that plays crucial roles in gene regulation through multiple mechanisms. BAZ2A functions as part of the NoRC-1 and NoRC-5 ISWI chr12 remodeling complexes, which facilitate nucleosome spacing and chr12 accessibility during DNA-templated processes 1. The protein contains a bromodomain that recognizes acetylated histones and an RNA-binding TAM domain that enables formation of phase-separated nuclear bodies dependent on RNA transcription 2. In prostate cancer, BAZ2A mediates gene repression through RNA-dependent interactions with TOP2A and KDM1A, targeting genes frequently silenced in metastatic disease 3. The protein demonstrates oncogenic properties, with high expression associated with poor prognosis across multiple cancer types and promotion of cell migration, invasion, and proliferation 4. BAZ2A nuclear bodies contact repressive H3K27me3 domains, and disruption of these bodies leads to gene upregulation 2. Chemical probes targeting BAZ2A's bromodomain have been developed for therapeutic applications, though bromodomain inhibition alone may not fully recapitulate BAZ2A's cellular functions 56.

Sources cited
1
BAZ2A functions in NoRC ISWI chromatin remodeling complexes and interacts with cofactors BAZ1A and BAZ2A
PMID: 40743397
2
BAZ2A forms RNA-dependent phase-separated nuclear bodies and contacts H3K27me3 repressive domains
PMID: 38599210
3
BAZ2A represses genes in prostate cancer through RNA-mediated interactions with TOP2A and KDM1A
PMID: 37184661
4
BAZ2A is highly expressed in multiple cancers and associated with poor prognosis and oncogenic properties
PMID: 38433277
5
Chemical probes targeting BAZ2A bromodomain may not fully recapitulate BAZ2A cellular functions
PMID: 37574751
6
GSK2801 is a selective chemical probe for BAZ2A and BAZ2B bromodomains
PMID: 25799074
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.51Moderate
premature birthOpen Targets
0.31Weak
atrial fibrillationOpen Targets
0.17Weak
posterior cortical atrophyOpen Targets
0.10Weak
benign prostatic hyperplasiaOpen Targets
0.09Suggestive
cancerOpen Targets
0.08Suggestive
hepatocellular carcinomaOpen Targets
0.08Suggestive
neoplasmOpen Targets
0.08Suggestive
hypertensionOpen Targets
0.07Suggestive
cardiac arrhythmiaOpen Targets
0.07Suggestive
essential hypertensionOpen Targets
0.06Suggestive
Hashimoto's thyroiditisOpen Targets
0.06Suggestive
thyroid diseaseOpen Targets
0.06Suggestive
hypothyroidismOpen Targets
0.05Suggestive
nasopharyngeal carcinomaOpen Targets
0.04Suggestive
prostate cancerOpen Targets
0.03Suggestive
Alzheimer diseaseOpen Targets
0.02Suggestive
hypertrophic cardiomyopathyOpen Targets
0.02Suggestive
response to xenobiotic stimulusOpen Targets
0.02Suggestive
prostate adenocarcinomaOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
POLE3Protein interaction100%RRP8Protein interaction100%HDAC1Protein interaction99%SIRT2Protein interaction96%ZNF215Protein interaction94%SUPT6HProtein interaction93%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
75%
Ovary
70%
Liver
41%
Heart
38%
Brain
36%
Gene Interaction Network
Click a node to explore
BAZ2APOLE3RRP8HDAC1SIRT2ZNF215SUPT6H
PROTEIN STRUCTURE
Preparing viewer…
PDB7QYO · 0.98 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.23Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.17 [0.13–0.23]
RankingsWhere BAZ2A stands among ~20K protein-coding genes
  • #5,716of 20,598
    Most Researched83
  • #612of 17,882
    Most Constrained (LOEUF)0.23 · top 5%
Genes detectedBAZ2A
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
An RNA-dependent and phase-separated active subnuclear compartment safeguards repressive chromatin domains.
PMID: 38599210
Mol Cell · 2024
1.00
2
SMARCA5 restricts chromatin accessibility to promote male meiosis and fertility in mammals.
PMID: 40743397
Proc Natl Acad Sci U S A · 2025
0.90
3
Reevaluation of bromodomain ligands targeting BAZ2A.
PMID: 37574751
Protein Sci · 2023
0.80
4
BAZ2A-RNA mediated association with TOP2A and KDM1A represses genes implicated in prostate cancer.
PMID: 37184661
Life Sci Alliance · 2023
0.70
5
Pan-cancer and multi-omics analyses revealed the diagnostic and prognostic value of BAZ2A in liver cancer.
PMID: 38433277
Sci Rep · 2024
0.60