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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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BCL3
BCL3 transcription coactivator
Chromosome 19 · 19q13.32
NCBI Gene: 602Ensembl: ENSG00000069399.15HGNC: HGNC:998UniProt: B7Z3N9
143PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
OncogeneTranscription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediatorregulation of non-canonical NF-kappaB signal transductionnegative regulation of non-canonical NF-kappaB signal transductionnucleusneurodegenerative diseasecolon adenocarcinomacolorectal adenocarcinomabile duct carcinoma
✦AI Summary

BCL3 is a transcriptional coactivator that plays dual regulatory roles in NF-κB signaling and cellular responses. In the cytoplasm, BCL3 inhibits nuclear translocation of NF-κB p50, while in the nucleus it acts as a transcriptional activator promoting NF-κB target gene expression 1. BCL3 regulates pro-survival genes including cIAP1 and cIAP2 through direct promoter binding, and its expression is controlled by proteasome inhibition and NF-κB subunit exchange on its own promoter 1. In disease contexts, BCL3 shows opposing roles. In allergic asthma, BCL3 prevents allergic sensitization by suppressing B-cell-derived IL-10 production under Bcl-3-Blimp-1-Bcl-6 regulation; BCL3 knockout mice show heightened vulnerability to house dust mite-induced asthma 2. Conversely, in pancreatic cancer, BCL3 acts as a tumor suppressor—BCL3 loss expands the cancer stem cell compartment, increases epithelial-mesenchymal transition, promotes metastasis, and reduces overall survival, while BCL3 expression levels stratify patients by molecular subtype and prognosis 3. In systemic lupus erythematosus, BCL3 expression is dysregulated downstream of IRF4 in plasma cells, contributing to kidney injury through TNF signaling pathway activation 4. BCL3 is also implicated in cutaneous T-cell lymphoma pathogenesis 1 and identified as a biomarker for secondary progressive multiple sclerosis 5. Additionally, BCL3 polymorphisms associate with dyslipidemia risk through gene-gene and gene-environment interactions 6.

Sources cited
1
BCL3 prevents allergic asthma by suppressing B-cell-derived IL-10 production; BCL3-/- mice show elevated IL-10 and heightened vulnerability to house dust mite-induced asthma
PMID: 37653127
2
BCL3 acts as a tumor suppressor in pancreatic cancer; BCL3 loss expands cancer stem cells, increases metastasis and epithelial-mesenchymal transition, and reduces survival
PMID: 33819482
3
BCL3 expression is dysregulated downstream of IRF4 in systemic lupus erythematosus kidney injury through TNF signaling pathway activation
PMID: 39501302
4
BCL3 regulates pro-survival genes cIAP1 and cIAP2 through direct promoter binding in cutaneous T-cell lymphoma; BCL3 expression is controlled by proteasome inhibition and NF-κB subunit exchange
PMID: 25089799
5
BCL3 is identified as a potential biomarker for secondary progressive multiple sclerosis in lesioned grey matter
PMID: 39557900
6
BCL3 polymorphisms associate with dyslipidemia risk through gene-gene and gene-environment interactions in the Chinese Maonan population
PMID: 29670124
7
BCL3 is a regulator of NF-κB, a transcriptional factor controlling over 400 genes involved in immune responses and inflammation
PMID: 34025678
8
BCL3 is involved in t(14;19) translocation associated with chronic lymphocytic leukemia and other B-cell malignancies
PMID: 9290956
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.45Moderate
colon adenocarcinomaOpen Targets
0.37Weak
bile duct carcinomaOpen Targets
0.37Weak
colorectal adenocarcinomaOpen Targets
0.37Weak
melanomaOpen Targets
0.30Weak
hepatocellular carcinomaOpen Targets
0.30Weak
skin basal cell carcinomaOpen Targets
0.30Weak
chronic lymphocytic leukemiaOpen Targets
0.29Weak
esophageal squamous cell carcinomaOpen Targets
0.29Weak
breast carcinomaOpen Targets
0.29Weak
papillary thyroid carcinomaOpen Targets
0.28Weak
head and neck squamous cell carcinomaOpen Targets
0.28Weak
lung adenocarcinomaOpen Targets
0.28Weak
breast ductal adenocarcinomaOpen Targets
0.28Weak
oral squamous cell carcinomaOpen Targets
0.28Weak
urinary bladder carcinomaOpen Targets
0.28Weak
esophageal adenocarcinomaOpen Targets
0.28Weak
clear cell renal carcinomaOpen Targets
0.28Weak
osteosarcomaOpen Targets
0.28Weak
skin squamous cell carcinomaOpen Targets
0.28Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
NFKB1Protein interaction100%NFKB2Protein interaction100%CYLDProtein interaction99%PIRProtein interaction98%RELBProtein interaction96%RELProtein interaction95%
Tissue Expression6 tissues
Liver
100%
Lung
58%
Bone Marrow
26%
Ovary
13%
Heart
4%
Brain
2%
Gene Interaction Network
Click a node to explore
BCL3NFKB1NFKB2CYLDPIRRELBREL
PROTEIN STRUCTURE
Preparing viewer…
PDB1K1A · 1.86 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.70LoF Tolerant
pLIⓘ
0.22Tolerant
Observed/Expected LoF0.42 [0.27–0.70]
RankingsWhere BCL3 stands among ~20K protein-coding genes
  • #3,187of 20,598
    Most Researched143 · top quartile
  • #5,346of 17,882
    Most Constrained (LOEUF)0.70
Genes detectedBCL3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
B-cell-derived IL-10 promotes allergic sensitization in asthma regulated by Bcl-3.
PMID: 37653127
Cell Mol Immunol · 2023
1.00
2
Bcl3 Couples Cancer Stem Cell Enrichment With Pancreatic Cancer Molecular Subtypes.
PMID: 33819482
Gastroenterology · 2021
0.90
3
METTL3 facilitates kidney injury through promoting IRF4-mediated plasma cell infiltration via an m6A-dependent manner in systemic lupus erythematosus.
PMID: 39501302
BMC Med · 2024
0.80
4
BCL3-PVRL2-TOMM40 SNPs, gene-gene and gene-environment interactions on dyslipidemia.
PMID: 29670124
Sci Rep · 2018
0.70
5
Bcl3 regulates pro-survival and pro-inflammatory gene expression in cutaneous T-cell lymphoma.
PMID: 25089799
Biochim Biophys Acta · 2014
0.60