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ยฉ 2026 GeneE
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GeneE
10 sources retrieved ยท Most recent: April 2026 ยท Index updated 14 days ago
โ“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
CACNA1S
calcium voltage-gated channel subunit alpha1 S
Chromosome 1 ยท 1q32.1
NCBI Gene: 779Ensembl: ENSG00000081248.13HGNC: HGNC:1397UniProt: B1ALM3
107PubMed Papers
24Diseases
41Drugs
126Pathogenic Variants
FUNCTIONAL ROLE
Hub GeneIon ChannelTransporter
RESEARCH IMPACT
Variant-Rich
CLINICAL
FDA Approved TargetOMIM Disease Gene
DATA QUALITY
โœ“ Experimental GO Evidenceโœ“ Swiss-Prot Reviewed
T-tubuleI bandvoltage-gated calcium channel complexrelease of sequestered calcium ion into cytosolhypokalemic periodic paralysis, type 1congenital myopathy 18hypertensionepilepsy
โœฆAI Summary

CACNA1S encodes the pore-forming alpha-1S subunit of the L-type voltage-gated calcium channel (dihydropyridine receptor, DHPR) in skeletal muscle 1. This channel mediates excitation-contraction coupling by directly coupling with the ryanodine receptor (RYR1) on the sarcoplasmic reticulum to trigger calcium release and muscle contraction 1. CACNA1S variants cause multiple neuromuscular disorders through distinct functional mechanisms. Gain-of-function mutations cause malignant hyperthermia (MH), a potentially fatal pharmacogenetic disorder characterized by hypermetabolic crisis during anesthesia exposure 2. Less than 1% of MH variants occur in CACNA1S, with RYR1 accounting for most cases 2. CACNA1S mutations also cause hypokalemic periodic paralysis through alterations in resting membrane potential 3. Novel loss-of-function mutations cause congenital myopathy presenting with perinatal hypotonia, weakness, and sarcoplasmic reticulum dilatation 1. These mutations demonstrate genotype-phenotype discordance, suggesting additional genetic modifiers in MH susceptibility 4. CACNA1S mutations represent an important but minority contributor to skeletal muscle channelopathies, with significant clinical implications for anesthetic management and muscle function.

Sources cited
1
CACNA1S encodes DHPR, the pore-forming subunit mediating excitation-contraction coupling; mutations cause congenital myopathy with impaired calcium release
PMID: 28012042
2
CACNA1S variants account for less than 1% of malignant hyperthermia cases, compared to RYR1 which is causal in most cases
PMID: 26238698
3
CACNA1S mutations cause hypokalemic periodic paralysis through gain-of-function alterations in channel function affecting resting membrane potential
PMID: 39174253
4
CACNA1S variants show genotype-phenotype discordance in malignant hyperthermia families, with role in 14-23% of non-RYR1/STAC3 susceptible families
PMID: 30236257
โš Limited data available โ€” This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsโ“˜24
hypokalemic periodic paralysis, type 1Open Targets
0.79Strong
congenital myopathy 18Open Targets
0.76Strong
hypertensionOpen Targets
0.61Moderate
epilepsyOpen Targets
0.61Moderate
coronary artery diseaseOpen Targets
0.60Moderate
Prinzmetal's anginaOpen Targets
0.60Moderate
fibromyalgiaOpen Targets
0.60Moderate
neuropathic painOpen Targets
0.60Moderate
SeizureOpen Targets
0.60Moderate
angina pectorisOpen Targets
0.60Moderate
cardiovascular diseaseOpen Targets
0.59Moderate
myocardial infarctionOpen Targets
0.59Moderate
restless legs syndromeOpen Targets
0.58Moderate
neuralgiaOpen Targets
0.58Moderate
congenital myopathyOpen Targets
0.57Moderate
hyperlipidemiaOpen Targets
0.57Moderate
strokeOpen Targets
0.57Moderate
anxiety disorderOpen Targets
0.57Moderate
postherpetic neuralgiaOpen Targets
0.57Moderate
heart failureOpen Targets
0.57Moderate
Congenital myopathy 18UniProt
Malignant hyperthermia 5UniProt
Periodic paralysis hypokalemic 1UniProt
Thyrotoxic periodic paralysis 1UniProt
Pathogenic Variants126
NM_000069.3(CACNA1S):c.1582C>T (p.Arg528Cys)Pathogenic
Hypokalemic periodic paralysis, type 1;Malignant hyperthermia, susceptibility to, 5|Hypokalemic periodic paralysis, type 1|not provided|Malignant hyperthermia, susceptibility to, 5|Hypokalemic periodic paralysis|Congenital myopathy 18
โ˜…โ˜…โ˜†โ˜†2025โ†’ Residue 528
NM_000069.3(CACNA1S):c.3716G>A (p.Arg1239His)Pathogenic
Hypokalemic periodic paralysis, type 1|not provided|Hypokalemic periodic paralysis, type 1;Malignant hyperthermia, susceptibility to, 5|Malignant hyperthermia, susceptibility to, 5|Congenital myopathy 18
โ˜…โ˜…โ˜†โ˜†2025โ†’ Residue 1239
NM_000069.3(CACNA1S):c.1234C>T (p.Arg412Ter)Pathogenic
Hypokalemic periodic paralysis, type 1;Malignant hyperthermia, susceptibility to, 5|Thyrotoxic periodic paralysis, susceptibility to, 1;Hypokalemic periodic paralysis, type 1;Malignant hyperthermia, susceptibility to, 5|Hypokalemic periodic paralysis, type 1|Malignant hyperthermia, susceptibility to, 5
โ˜…โ˜…โ˜†โ˜†2025โ†’ Residue 412
NM_000069.3(CACNA1S):c.4618C>T (p.Gln1540Ter)Pathogenic
Malignant hyperthermia, susceptibility to, 5;Hypokalemic periodic paralysis, type 1|Congenital myopathy 18
โ˜…โ˜…โ˜†โ˜†2025โ†’ Residue 1540
NM_000069.3(CACNA1S):c.124A>T (p.Lys42Ter)Pathogenic
Malignant hyperthermia, susceptibility to, 5;Hypokalemic periodic paralysis, type 1|Congenital myopathy 18
โ˜…โ˜…โ˜†โ˜†2025โ†’ Residue 42
NM_000069.3(CACNA1S):c.1847G>A (p.Trp616Ter)Pathogenic
Hypokalemic periodic paralysis, type 1;Malignant hyperthermia, susceptibility to, 5|Hypokalemic periodic paralysis, type 1;Malignant hyperthermia, susceptibility to, 5;Thyrotoxic periodic paralysis, susceptibility to, 1|Hypokalemic periodic paralysis, type 1|Malignant hyperthermia, susceptibility to, 5
โ˜…โ˜…โ˜†โ˜†2025โ†’ Residue 616
NM_000069.3(CACNA1S):c.3715C>G (p.Arg1239Gly)Pathogenic
Hypokalemic periodic paralysis, type 1|not provided|Hypokalemic periodic paralysis, type 1;Malignant hyperthermia, susceptibility to, 5|Malignant hyperthermia, susceptibility to, 5
โ˜…โ˜…โ˜†โ˜†2025โ†’ Residue 1239
NM_000069.3(CACNA1S):c.4038del (p.Glu1348fs)Pathogenic
not provided|Hypokalemic periodic paralysis, type 1;Malignant hyperthermia, susceptibility to, 5|Hypokalemic periodic paralysis, type 1;Congenital myopathy 18;Malignant hyperthermia, susceptibility to, 5;Thyrotoxic periodic paralysis, susceptibility to, 1
โ˜…โ˜…โ˜†โ˜†2024โ†’ Residue 1348
NM_000069.3(CACNA1S):c.4967del (p.Leu1656fs)Pathogenic
Hypokalemic periodic paralysis, type 1;Malignant hyperthermia, susceptibility to, 5|Congenital myopathy 18|Centronuclear myopathy|Hypokalemic periodic paralysis, type 1;Thyrotoxic periodic paralysis, susceptibility to, 1;Malignant hyperthermia, susceptibility to, 5;Congenital myopathy 18
โ˜…โ˜…โ˜†โ˜†2024โ†’ Residue 1656
NM_000069.3(CACNA1S):c.3760C>T (p.Arg1254Ter)Pathogenic
Hypokalemic periodic paralysis, type 1;Malignant hyperthermia, susceptibility to, 5|Malignant hyperthermia, susceptibility to, 5
โ˜…โ˜…โ˜†โ˜†2024โ†’ Residue 1254
NM_000069.3(CACNA1S):c.1233-1G>ALikely pathogenic
Hypokalemic periodic paralysis, type 1;Malignant hyperthermia, susceptibility to, 5|Hypokalemic periodic paralysis, type 1|Malignant hyperthermia, susceptibility to, 5
โ˜…โ˜…โ˜†โ˜†2024
NM_000069.3(CACNA1S):c.3256C>A (p.Arg1086Ser)Likely pathogenic
not provided|Malignant hyperthermia of anesthesia|Thyrotoxic periodic paralysis, susceptibility to, 1;Malignant hyperthermia, susceptibility to, 5;Congenital myopathy 18;Hypokalemic periodic paralysis, type 1
โ˜…โ˜…โ˜†โ˜†2024โ†’ Residue 1086
NM_000069.3(CACNA1S):c.258+2T>CLikely pathogenic
Hypokalemic periodic paralysis, type 1;Malignant hyperthermia, susceptibility to, 5|Hypokalemic periodic paralysis, type 1;Malignant hyperthermia, susceptibility to, 5;Thyrotoxic periodic paralysis, susceptibility to, 1;Congenital myopathy 18
โ˜…โ˜…โ˜†โ˜†2024
NM_000069.3(CACNA1S):c.1189_1190del (p.Ser397fs)Pathogenic
Congenital myopathy 18|Hypokalemic periodic paralysis, type 1;Malignant hyperthermia, susceptibility to, 5|Centronuclear myopathy
โ˜…โ˜…โ˜†โ˜†2024โ†’ Residue 397
NM_000069.3(CACNA1S):c.2224C>T (p.Pro742Ser)Pathogenic
not provided|Congenital myopathy 18
โ˜…โ˜…โ˜†โ˜†2024โ†’ Residue 742
NM_000069.3(CACNA1S):c.4113+1G>APathogenic
not provided|Hypokalemic periodic paralysis, type 1;Malignant hyperthermia, susceptibility to, 5|Malignant hyperthermia, susceptibility to, 5|Hypokalemic periodic paralysis, type 1|Hypokalemic periodic paralysis, type 1;Malignant hyperthermia, susceptibility to, 5;Thyrotoxic periodic paralysis, susceptibility to, 1;Congenital myopathy 18
โ˜…โ˜…โ˜†โ˜†2024
NM_000069.3(CACNA1S):c.2690G>C (p.Arg897Thr)Pathogenic
Hypokalemic periodic paralysis, type 1|not provided|Hypokalemic periodic paralysis, type 1;Malignant hyperthermia, susceptibility to, 5|Malignant hyperthermia, susceptibility to, 5
โ˜…โ˜…โ˜†โ˜†2023โ†’ Residue 897
NM_000069.3(CACNA1S):c.1401_1414del (p.Asn468fs)Pathogenic
Hypokalemic periodic paralysis, type 1;Malignant hyperthermia, susceptibility to, 5|Thyrotoxic periodic paralysis, susceptibility to, 1;Hypokalemic periodic paralysis, type 1;Malignant hyperthermia, susceptibility to, 5|Malignant hyperthermia, susceptibility to, 5|Hypokalemic periodic paralysis, type 1
โ˜…โ˜…โ˜†โ˜†2023โ†’ Residue 468
NM_000069.3(CACNA1S):c.4113+1G>CLikely pathogenic
Hypokalemic periodic paralysis, type 1;Malignant hyperthermia, susceptibility to, 5|Hypokalemic periodic paralysis, type 1|Malignant hyperthermia, susceptibility to, 5|not provided
โ˜…โ˜…โ˜†โ˜†2023
NM_000069.3(CACNA1S):c.2707C>T (p.Arg903Ter)Pathogenic
not provided|Hypokalemic periodic paralysis, type 1;Malignant hyperthermia, susceptibility to, 5|Malignant hyperthermia, susceptibility to, 5|Hypokalemic periodic paralysis, type 1
โ˜…โ˜…โ˜†โ˜†2023โ†’ Residue 903
View on ClinVar โ†—
Drug Targets41
AMLODIPINEApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
AMLODIPINE BENZOATEApproved
Voltage-gated L-type calcium channel blocker
hypertension
AMLODIPINE BESYLATEApproved
Voltage-gated L-type calcium channel blocker
Prinzmetal's angina
ATAGABALINPhase II
Voltage-gated calcium channel modulator
insomnia
AZD1305Phase II
HERG blocker
atrial flutter
AZELNIDIPINEApproved
Voltage-gated L-type calcium channel blocker
hypertension
BARNIDIPINEApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
BENIDIPINEApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
BEPRIDILApproved
Voltage-gated calcium channel blocker
cardiovascular disease
CILNIDIPINEApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
CINNARIZINEApproved
Histamine H1 receptor antagonist
CLEVIDIPINEApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
DILTIAZEMApproved
Voltage-gated L-type calcium channel blocker
hemorrhoid
DILTIAZEM HYDROCHLORIDEApproved
Voltage-gated L-type calcium channel blocker
angina pectoris
DRONEDARONEApproved
Sodium channel alpha subunit blocker
cardiac arrhythmia
DRONEDARONE HYDROCHLORIDEApproved
Sodium channel alpha subunit blocker
atrial fibrillation
ELPETRIGINEPhase I
Sodium channel protein type II alpha subunit blocker
bipolar disorder
FELODIPINEApproved
Mineralocorticoid receptor antagonist
hypertension
GABAPENTINApproved
Voltage-gated calcium channel modulator
epilepsy
GABAPENTIN ENACARBILApproved
Voltage-gated calcium channel modulator
restless legs syndrome
IMAGABALINPhase III
Voltage-gated calcium channel modulator
generalized anxiety disorder
ISRADIPINEApproved
Voltage-gated L-type calcium channel blocker
hypertension
LACIDIPINEApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
LERCANIDIPINEApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
LEVAMLODIPINEApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
LEVAMLODIPINE MALEATEApproved
Voltage-gated L-type calcium channel blocker
hypertension
MANIDIPINE 6300Approved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
NICARDIPINEApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
NICARDIPINE HYDROCHLORIDEApproved
Voltage-gated L-type calcium channel blocker
hypertension
NIFEDIPINEApproved
Voltage-gated L-type calcium channel blocker
hypertension
NILVADIPINEApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
NIMODIPINEApproved
Mineralocorticoid receptor antagonist
NISOLDIPINEApproved
Voltage-gated L-type calcium channel blocker
hypertension
NITRENDIPINEApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
PHLOROGLUCINOLApproved
Voltage-gated calcium channel blocker
gastrointestinal disease
PREGABALINApproved
Voltage-gated calcium channel modulator
neuropathic pain
SULOCTIDILApproved
Voltage-gated calcium channel blocker
cardiovascular disease
TERODILINEApproved
Muscarinic acetylcholine receptor antagonist
Urinary incontinence
TERODILINE HYDROCHLORIDEUNKNOWN
Muscarinic acetylcholine receptor antagonist
VERAPAMILApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
VERAPAMIL HYDROCHLORIDEApproved
Voltage-gated L-type calcium channel blocker
hypertension
Related Genes
CALML3Protein interaction100%CALML6Protein interaction100%CALML5Protein interaction100%CALM3Protein interaction100%CALML4Protein interaction100%CACNA2D3Protein interaction100%
Tissue Expression6 tissues
Lung
100%
Brain
81%
Liver
15%
Ovary
11%
Heart
0%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
CACNA1SCALML3CALML6CALML5CALM3CALML4CACNA2D3
PROTEIN STRUCTURE
Preparing viewerโ€ฆ
PDB6B27 ยท 1.73 ร… ยท X-ray
View on RCSB โ†—
Constraintโ“˜
LOEUFโ“˜
0.65LoF Tolerant
pLIโ“˜
0.00Tolerant
Observed/Expected LoF0.56 [0.48โ€“0.65]
RankingsWhere CACNA1S stands among ~20K protein-coding genes
  • #4,423of 20,598
    Most Researched107 ยท top quartile
  • #51of 1,025
    FDA-Approved Drug Targets36 ยท top 5%
  • #621of 5,498
    Most Pathogenic Variants126 ยท top quartile
  • #4,725of 17,882
    Most Constrained (LOEUF)0.65
Genes detectedCACNA1S
Sources retrieved10 papers
Response timeโ€”
๐Ÿ“„ Sources
10โ–ผ
1
Malignant hyperthermia: a review.
PMID: 26238698
Orphanet J Rare Dis ยท 2015
1.00
2
Periodic paralysis.
PMID: 39174253
Handb Clin Neurol ยท 2024
0.90
3
Genetic epidemiology of malignant hyperthermia in the UK.
PMID: 30236257
Br J Anaesth ยท 2018
0.80
4
Calcium channelopathies and intellectual disability: a systematic review.
PMID: 33985586
Orphanet J Rare Dis ยท 2021
0.70
5
Genome-wide association analyses identify 95 risk loci and provide insights into the neurobiology of post-traumatic stress disorder.
PMID: 38637617
Nat Genet ยท 2024
0.60