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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CALML3
calmodulin like 3
Chromosome 10 · 10p15.1
NCBI Gene: 810Ensembl: ENSG00000178363.5HGNC: HGNC:1452UniProt: P27482
67PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingextracellular exosomeregulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulumcalcineurin-mediated signalingocular hypotensiongastric ulcerneoplasmhepatocellular carcinoma
✦AI Summary

CALML3 (calmodulin-like 3) functions as a tumor suppressor gene with roles in cell differentiation and proliferation control. In normal human skin, CALML3 is strongly expressed in differentiating keratinocyte layers, exhibiting peripheral localization in suprabasal cells and nuclear localization in the stratum granulosum 1. Nuclear CALML3 expression is inversely correlated with the proliferation marker Ki-67, indicating its association with terminal cell differentiation and post-mitotic state 1. CALML3 acts as a suppressor of metastasis in hepatocellular carcinoma, where loss of CALML3 predicts shorter overall and relapse-free survival in postoperative patients 2. The gene serves as a dynamic network biomarker that can indicate metastasis initiation at the tipping point before irreversible tumor progression 2. Additionally, CALML3 shows potential correlation with disease severity in late-onset Pompe disease, suggesting it may serve as a biomarker for this lysosomal storage disorder 3. The loss of nuclear CALML3 indicates progression to a proliferative and potentially malignant phenotype, making it a useful marker for distinguishing normal from transformed cellular states 1.

Sources cited
1
CALML3 is expressed in differentiating keratinocyte layers with nuclear localization inversely correlated to Ki-67 proliferation marker
PMID: 23638045
2
CALML3 acts as a metastasis suppressor in hepatocellular carcinoma and serves as a dynamic network biomarker for metastasis initiation
PMID: 29445139
3
CALML3 shows potential correlation with disease severity in late-onset Pompe disease
PMID: 39914294
⚠Limited data available — This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
ocular hypotensionOpen Targets
0.29Weak
gastric ulcerOpen Targets
0.14Weak
neoplasmOpen Targets
0.10Suggestive
hepatocellular carcinomaOpen Targets
0.08Suggestive
papillary thyroid carcinomaOpen Targets
0.07Suggestive
non-small cell lung carcinomaOpen Targets
0.06Suggestive
lymphatic system diseaseOpen Targets
0.06Suggestive
glioblastoma multiformeOpen Targets
0.05Suggestive
vein disorderOpen Targets
0.05Suggestive
esophageal adenocarcinomaOpen Targets
0.04Suggestive
psoriatic arthritisOpen Targets
0.04Suggestive
psoriasisOpen Targets
0.03Suggestive
prostate carcinomaOpen Targets
0.03Suggestive
colitisOpen Targets
0.03Suggestive
osteoporosisOpen Targets
0.03Suggestive
small cell lung carcinomaOpen Targets
0.02Suggestive
Mungan syndromeOpen Targets
0.02Suggestive
Miyoshi myopathyOpen Targets
0.02Suggestive
alcohol drinkingOpen Targets
0.02Suggestive
autismOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CACNA1AProtein interaction100%CACNA1CProtein interaction100%CACNA1DProtein interaction100%CACNA1SProtein interaction100%NOS2Protein interaction100%MARCKSProtein interaction100%
Tissue Expression6 tissues
Brain
100%
Liver
12%
Ovary
3%
Lung
1%
Heart
0%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
CALML3CACNA1ACACNA1CCACNA1DCACNA1SNOS2MARCKS
PROTEIN STRUCTURE
Preparing viewer…
PDB1GGZ · 1.50 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.71LoF Tolerant
pLIⓘ
0.27Tolerant
Observed/Expected LoF0.46 [0.16–1.71]
RankingsWhere CALML3 stands among ~20K protein-coding genes
  • #6,967of 20,598
    Most Researched67
  • #16,135of 17,882
    Most Constrained (LOEUF)1.71
Genes detectedCALML3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
CALML3-AS1 enhances malignancies and stemness of small cell lung cancer cells through interacting with DAXX protein and promoting GLUT4-mediated aerobic glycolysis.
PMID: 39617259
Toxicol Appl Pharmacol · 2025
1.00
2
Immunolocalization of the tumor-sensitive calmodulin-like protein CALML3 in normal human skin and hyperproliferative skin disorders.
PMID: 23638045
PLoS One · 2013
0.90
3
LncRNA CALML3-AS1 modulated by m
PMID: 37884580
Cancer Gene Ther · 2023
0.80
4
Dynamic network biomarker indicates pulmonary metastasis at the tipping point of hepatocellular carcinoma.
PMID: 29445139
Nat Commun · 2018
0.70
5
Metabolic and proteomic profiles provide insights on mechanism of late onset Pompe disease.
PMID: 39914294
Mol Genet Metab · 2025
0.60