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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CALY
calcyon neuron specific vesicular protein
Chromosome 10 · 10q26.3
NCBI Gene: 50632Ensembl: ENSG00000130643.10HGNC: HGNC:17938UniProt: Q9NYX4
21PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingpostsynaptic endocytic zoneplasma membranepositive regulation of endocytosisneuroinflammatory disorderneurodegenerative diseaseglioblastoma multiformeastrocytoma
✦AI Summary

Based on the provided abstracts, insufficient information is available to comprehensively characterize the primary function and mechanism of the CALY (calcyon neuron-specific vesicular protein) gene. The available evidence suggests CALY functions as a scaffolding protein involved in axonal transport regulation. CALY appears to coordinate microtubule-dependent transport by interacting with motor proteins (DIC, KIF5A, p150Glued, Lis1) and vesicle coat proteins (AP-1 and AP-3) 1. Functional studies demonstrate that CALY knockdown increases static late endosomes/lysosome-related organelles in cultured axons, while overexpression stimulates movement of these organelles 1. The protein's scaffolding function requires AP-3 binding, as a mutant unable to bind AP-3 failed to pull down motor proteins or enhance organelle transport 1. Regarding disease relevance, genetic association studies identified a CALY polymorphism (rs2298122) associated with smoking initiation in female adolescents across Chinese and Caucasian populations 2. However, the provided abstracts contain limited mechanistic detail about CALY's molecular function, and several abstracts discuss unrelated compounds named calycosin rather than the CALY gene product. More comprehensive studies are needed to fully elucidate CALY's cellular mechanisms and clinical significance.

Sources cited
1
CALY interacts with motor proteins and vesicle coat proteins to regulate axonal transport of late endosomes/lysosome-related organelles
PMID: 29949458
2
CALY polymorphism rs2298122 is associated with smoking initiation in female adolescents
PMID: 21415033
⚠Limited data available — This gene has 2 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
neuroinflammatory disorderOpen Targets
0.41Moderate
neurodegenerative diseaseOpen Targets
0.08Suggestive
glioblastoma multiformeOpen Targets
0.05Suggestive
astrocytomaOpen Targets
0.04Suggestive
medulloblastomaOpen Targets
0.04Suggestive
atypical teratoid rhabdoid tumorOpen Targets
0.03Suggestive
central nervous system cancerOpen Targets
0.03Suggestive
attention deficit hyperactivity disorderOpen Targets
0.03Suggestive
congenital adrenal hyperplasiaOpen Targets
0.03Suggestive
schizophreniaOpen Targets
0.02Suggestive
oligodendrogliomaOpen Targets
0.02Suggestive
large cell medulloblastomaOpen Targets
0.02Suggestive
ependymomaOpen Targets
0.01Suggestive
Alzheimer diseaseOpen Targets
0.01Suggestive
pachyonychia congenitaOpen Targets
0.01Suggestive
cocaine dependenceOpen Targets
0.01Suggestive
bone diseaseOpen Targets
0.01Suggestive
childhood supratentorial ependymomaOpen Targets
0.01Suggestive
major depressive disorderOpen Targets
0.01Suggestive
pituitary cancerOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
DRD1Protein interaction95%NSG2Shared pathway40%AP2B1Shared pathway25%ALS2CLShared pathway25%EPS15Shared pathway23%NSG1Shared pathway20%
Tissue Expression6 tissues
Brain
100%
Liver
1%
Bone Marrow
1%
Ovary
1%
Lung
1%
Heart
0%
Gene Interaction Network
Click a node to explore
CALYDRD1NSG2AP2B1ALS2CLEPS15NSG1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q9NYX4
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.55LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.92 [0.57–1.55]
RankingsWhere CALY stands among ~20K protein-coding genes
  • #13,852of 20,598
    Most Researched21
  • #15,437of 17,882
    Most Constrained (LOEUF)1.55
Genes detectedCALY
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Mpox diagnostics: Review of current and emerging technologies.
PMID: 36571266
J Med Virol · 2023
1.00
2
Calycosin inhibits the proliferation and metastasis of renal cell carcinoma through the MAZ/HAS2 signaling pathway.
PMID: 39120474
Phytother Res · 2024
0.90
3
CalY is a major virulence factor and a biofilm matrix protein.
PMID: 30548239
Mol Microbiol · 2019
0.80
4
Calycosin synergizes with methotrexate in the treatment of Sjögren's disease by targeting BATF in T follicular helper cells.
PMID: 40181166
Acta Pharmacol Sin · 2025
0.70
5
Association of the calcyon neuron-specific vesicular protein gene (CALY) with adolescent smoking initiation in China and California.
PMID: 21415033
Am J Epidemiol · 2011
0.60