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GeneE
26 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
CAST
calpastatin
Chromosome 5 Β· 5q15
NCBI Gene: 831Ensembl: ENSG00000310517.1HGNC: HGNC:1515UniProt: A0A6Q8PH20
159PubMed Papers
21Diseases
0Drugs
13Pathogenic Variants
RESEARCH IMPACT
Trending
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
endoplasmic reticulumcytosolplasma membraneRNA bindingpeeling skin-leukonuchia-acral punctate keratoses-cheilitis-knuckle pads syndromeobesity due to prohormone convertase I deficiencyAlzheimer diseasecheilitis
✦AI Summary

CAST (calpastatin) encodes a specific inhibitor of calpain, a calcium-dependent cysteine protease. The protein exhibits calcium-dependent cysteine-type endopeptidase inhibitor activity and plays important roles in cellular calcium signaling and protein degradation processes. CAST demonstrates RNA binding capabilities and localizes to multiple cellular compartments including cytosol, endoplasmic reticulum, and plasma membrane. The gene has been associated with keratoconus through gene-environment interactions, where specific SNPs (rs26515, rs27991, and rs9314177) in CAST show negative interactions with eye-rubbing behavior 1. This suggests CAST variants may modulate susceptibility to mechanical stress-induced corneal degeneration. Additionally, CAST is linked to a rare genetic condition characterized by peeling skin with leukonychia, acral punctate keratoses, cheilitis, and knuckle pads, indicating its importance in skin integrity and keratinization processes. The protein's role in calcium-dependent processes and protease inhibition makes it functionally relevant for cellular homeostasis and tissue maintenance. However, the provided abstracts primarily focus on CAST-Seq methodology for genome editing analysis rather than the CAST gene itself, limiting detailed mechanistic insights into the protein's specific biochemical functions and disease pathways.

Sources cited
1
CAST gene SNPs rs26515, rs27991, and rs9314177 show negative gene-environment interactions with eye-rubbing in keratoconus patients
PMID: 39186261
⚠Limited data available β€” This gene has 1 indexed publication. Summary and analysis may be incomplete.
Disease Associationsβ“˜21
peeling skin-leukonuchia-acral punctate keratoses-cheilitis-knuckle pads syndromeOpen Targets
0.72Strong
obesity due to prohormone convertase I deficiencyOpen Targets
0.54Moderate
Alzheimer diseaseOpen Targets
0.38Weak
cheilitisOpen Targets
0.37Weak
Knuckle pads-leukonychia-sensorineural deafness-palmoplantar hyperkeratosis syndromeOpen Targets
0.37Weak
punctate palmoplantar keratodermaOpen Targets
0.37Weak
obesity due to melanocortin 4 receptor deficiencyOpen Targets
0.35Weak
obesityOpen Targets
0.29Weak
blood coagulation diseaseOpen Targets
0.27Weak
neuroinflammatory disorderOpen Targets
0.26Weak
gestational diabetesOpen Targets
0.26Weak
iridocyclitisOpen Targets
0.24Weak
genetic disorderOpen Targets
0.19Weak
inherited obesityOpen Targets
0.19Weak
iritisOpen Targets
0.19Weak
autoimmune diseaseOpen Targets
0.18Weak
ciliary body disorderOpen Targets
0.18Weak
iris disorderOpen Targets
0.18Weak
corneal diseaseOpen Targets
0.17Weak
scleral disorderOpen Targets
0.17Weak
Peeling skin with leukonychia, acral punctate keratoses, cheilitis, and knuckle padsUniProt
Pathogenic Variants13
NM_001750.7(CAST):c.630+2T>CLikely pathogenic
Peeling skin-leukonuchia-acral punctate keratoses-cheilitis-knuckle pads syndrome
β˜…β˜†β˜†β˜†2025
NM_001750.7(CAST):c.1626+1G>ALikely pathogenic
not provided
β˜…β˜†β˜†β˜†2025
NM_001750.7(CAST):c.2033_2037del (p.Val678fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 678
NM_001750.7(CAST):c.1882C>T (p.Gln628Ter)Likely pathogenic
Peeling skin-leukonuchia-acral punctate keratoses-cheilitis-knuckle pads syndrome
β˜…β˜†β˜†β˜†2024β†’ Residue 628
NM_001750.7(CAST):c.1174dup (p.Leu392fs)Likely pathogenic
Peeling skin-leukonuchia-acral punctate keratoses-cheilitis-knuckle pads syndrome
β˜…β˜†β˜†β˜†2024β†’ Residue 392
NM_001750.7(CAST):c.289C>T (p.Gln97Ter)Likely pathogenic
Peeling skin-leukonuchia-acral punctate keratoses-cheilitis-knuckle pads syndrome
β˜…β˜†β˜†β˜†2024β†’ Residue 97
NM_001750.7(CAST):c.454C>T (p.Gln152Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 152
NM_001750.7(CAST):c.694G>T (p.Gly232Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 232
NM_001750.7(CAST):c.1702G>T (p.Glu568Ter)Likely pathogenic
CAST-related disorder
β˜…β˜†β˜†β˜†2022β†’ Residue 568
NM_001750.7(CAST):c.1495C>T (p.Gln499Ter)Likely pathogenic
CAST-related disorder
β˜…β˜†β˜†β˜†2022β†’ Residue 499
NM_001750.7(CAST):c.1873del (p.Val625fs)Pathogenic
Peeling skin-leukonuchia-acral punctate keratoses-cheilitis-knuckle pads syndrome
β˜†β˜†β˜†β˜†2015β†’ Residue 625
NM_001750.7(CAST):c.547A>T (p.Lys183Ter)Pathogenic
Peeling skin-leukonuchia-acral punctate keratoses-cheilitis-knuckle pads syndrome
β˜†β˜†β˜†β˜†2015β†’ Residue 183
NM_001750.7(CAST):c.730dup (p.Ile244fs)Pathogenic
Peeling skin-leukonuchia-acral punctate keratoses-cheilitis-knuckle pads syndrome
β˜†β˜†β˜†β˜†2015β†’ Residue 244
View on ClinVar β†—
Related Genes
CAPN1Protein interaction100%CAPN2Protein interaction100%TLN1Protein interaction97%CAPN8Protein interaction96%CAPN5Protein interaction93%CAPN3Protein interaction92%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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CASTCAPN1CAPN2TLN1CAPN8CAPN5CAPN3
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt P20810
View on AlphaFold β†—
RankingsWhere CAST stands among ~20K protein-coding genes
  • #2,823of 20,598
    Most Researched159 Β· top quartile
  • #2,578of 5,498
    Most Pathogenic Variants13
Genes detectedCAST
Sources retrieved26 papers
Response timeβ€”
πŸ“„ Sources
26β–Ό
1
Quantitative evaluation of chromosomal rearrangements in gene-edited human stem cells by CAST-Seq.
PMID: 33626327
Cell Stem Cell Β· 2021
1.00
2
Third-generation novel technologies for gene editing.
PMID: 40738762
Trends Biotechnol Β· 2026
0.90
3
Aspartate aminotransferase isoenzymes.
PMID: 2225456
Clin Biochem Β· 1990
0.84
4
Targeted DNA integration in human cells without double-strand breaks using CRISPR-associated transposases.
PMID: 36991112
Nat Biotechnol Β· 2024
0.80
5
Rapid, biochemical tagging of cellular activity history in vivo.
PMID: 39103446
Nat Methods Β· 2024
0.70